{
  "version": "https://jsonfeed.org/version/1.1",
  "title": "The NIG Supercomputer",
  "home_page_url": "http://localhost",
  "feed_url": "http://localhost/en/feed.json",
  "language": "en",
  "items": [
    {
      "id": "http://localhost/en/advanced_guides/AlphaFold/Alphafold_2_1/",
      "url": "http://localhost/en/advanced_guides/AlphaFold/Alphafold_2_1/",
      "title": "alphafold 2.1",
      "content_text": "Introduction The NIG supercomputer provides the singularity image with alphafold 2.1 installed ( pat...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/advanced_guides/AlphaFold/Alphafold_2_2/",
      "url": "http://localhost/en/advanced_guides/AlphaFold/Alphafold_2_2/",
      "title": "alphafold 2.2",
      "content_text": "Introduction The NIG supercomputer provides the singularity image with alphafold 2.2.2 installed and...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/advanced_guides/AlphaFold/Alphafold_2_3/",
      "url": "http://localhost/en/advanced_guides/AlphaFold/Alphafold_2_3/",
      "title": "alphafold 2.3",
      "content_text": "Introduction The NIG supercomputer provides the apptainer singularity image with alphafold 2.3.2 ins...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/advanced_guides/AlphaFold/Alphafold_3_0_1/",
      "url": "http://localhost/en/advanced_guides/AlphaFold/Alphafold_3_0_1/",
      "title": "alphafold 3.0.1",
      "content_text": "Overview AlphaFold3 is a protein structure prediction program developed by DeepMind. On the NIG supe...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/advanced_guides/Rhelixa_RNAseq/",
      "url": "http://localhost/en/advanced_guides/Rhelixa_RNAseq/",
      "title": "Introduction",
      "content_text": "The RNA-seq*1 analysis pipeline has been provided by Rhelixa Corporation (CTO: Ryu Nakaki), which ha...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/advanced_guides/Rhelixa_RNAseq/Rhelixa_RNAseq_manual/",
      "url": "http://localhost/en/advanced_guides/Rhelixa_RNAseq/Rhelixa_RNAseq_manual/",
      "title": "User manual",
      "content_text": "Rhelixa Co., Ltd. 13 Aug 2020 First edition. 1. Configuration and Use 1. 1 Execution Specify the fol...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/advanced_guides/TogoImputation/imputation_server/",
      "url": "http://localhost/en/advanced_guides/TogoImputation/imputation_server/",
      "title": "TogoImputation",
      "content_text": "The Imputation Server is a service to support imputation analysis of SNP array data. Michigan Imputa...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/advanced_guides/TogoImputation/imputation_server_hail/",
      "url": "http://localhost/en/advanced_guides/TogoImputation/imputation_server_hail/",
      "title": "Tutorial 3 - PRS calculation with hail",
      "content_text": "This Tutorial 3 describes how to set up an environment for analysing the results of an imputation se...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/advanced_guides/TogoImputation/imputation_server_hibag/",
      "url": "http://localhost/en/advanced_guides/TogoImputation/imputation_server_hibag/",
      "title": "Tutorial 4 - HLA Genotype Imputation workflows using HIBAG",
      "content_text": "Connecting to NIG Guacamole desktop environment You need to sign in to NIG Guacamole desktop environ...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/advanced_guides/TogoImputation/imputation_server_install/",
      "url": "http://localhost/en/advanced_guides/TogoImputation/imputation_server_install/",
      "title": "Install Manual",
      "content_text": "Configuration and usage Installing jq The command is essential, so if you don't have it, install it....",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/advanced_guides/TogoImputation/imputation_server_tutorial/",
      "url": "http://localhost/en/advanced_guides/TogoImputation/imputation_server_tutorial/",
      "title": "Tutorial 1 - Using the public reference panel",
      "content_text": "Procedures for using this system This system executes workflows in the following steps. 1. Prepare t...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/advanced_guides/TogoImputation/imputation_server_tutorial2/",
      "url": "http://localhost/en/advanced_guides/TogoImputation/imputation_server_tutorial2/",
      "title": "Tutorial 2 - Using the restricted release reference panel",
      "content_text": "Procedures for using this system This system executes workflows in the following steps. 1. Prepare r...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/advanced_guides/benchmark/benchmark_dorado/",
      "url": "http://localhost/en/advanced_guides/benchmark/benchmark_dorado/",
      "title": "Benchmark (dorado)",
      "content_text": "1. Introduction This benchmark compares the computational time for basecalling of nanopore sequencin...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/advanced_guides/benchmark/benchmark_parabricks/",
      "url": "http://localhost/en/advanced_guides/benchmark/benchmark_parabricks/",
      "title": "Benckmark(NVIDIA Parabricks)",
      "content_text": "1. Overview This page presents the results of detailed performance testing of the genome analysis to...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/advanced_guides/bionemo/",
      "url": "http://localhost/en/advanced_guides/bionemo/",
      "title": "NVIDIA BioNeMo",
      "content_text": "Overview BioNeMo is a drug discovery support platform developed by NVIDIA, which enables efficient m...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/advanced_guides/commentary/",
      "url": "http://localhost/en/advanced_guides/commentary/",
      "title": "User Commentary",
      "content_text": "@nigyta - How to use Jupyter Notebook with the NIG Supercomputer (Qiita 20 Apr 2020) - tips for usin...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/advanced_guides/experimental/",
      "url": "http://localhost/en/advanced_guides/experimental/",
      "title": "Experimental Services",
      "content_text": "- biocontainers_image - Program to search Apptainer image files for biocontainers.",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/advanced_guides/parabricks/",
      "url": "http://localhost/en/advanced_guides/parabricks/",
      "title": "How to use NVIDIA Clara Parabricks",
      "content_text": "System Overview NVIDIA Clara Parabricks is a genome analysis pipeline which is compatible with GATK....",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/advanced_guides/topics/advanced_guide_2020-2022/",
      "url": "http://localhost/en/advanced_guides/topics/advanced_guide_2020-2022/",
      "title": "Topics before 2022",
      "content_text": "--- NBDC-DDBJ Imputation Server (beta) 18 Oct 2022. The Imputation Server is a service to support im...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/advanced_guides/topics/advanced_guide_2023/",
      "url": "http://localhost/en/advanced_guides/topics/advanced_guide_2023/",
      "title": "Topics in 2023",
      "content_text": "--- The omics data graphing tool RIAS®️ Visualization is now available. :::danger This service ended...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/advanced_guides/topics/advanced_guide_2025/",
      "url": "http://localhost/en/advanced_guides/topics/advanced_guide_2025/",
      "title": "Topic in 2025",
      "content_text": "--- PortablePipeline 5 June 2025 The NGS analysis pipeline tool PortablePipeline has been updated to...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/application/agreement_signing/",
      "url": "http://localhost/en/application/agreement_signing/",
      "title": "誓約書に署名する方法",
      "content_text": "アカウントの新規登録の際には、責任者の方からの誓約書の提出が必要です。 誓約書には署名欄があり、電子サイン(Adobe Acrobat Sign)をお願いしております。 参考 - 「電子サインの作成方...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/application/agreement_signing/signing_PDF_domestic_resident/",
      "url": "http://localhost/en/application/agreement_signing/signing_PDF_domestic_resident/",
      "title": "Steps to sign a PDF (the domestic resident)",
      "content_text": "The helpdesk of the NIG Supercomputer() will send an email to the responsible person and the applica...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/application/agreement_signing/signing_PDF_non-resident/",
      "url": "http://localhost/en/application/agreement_signing/signing_PDF_non-resident/",
      "title": "Steps to sign a PDF (the non-domestic resident or the specific categories)",
      "content_text": "The helpdesk of the NIG Supercomputer() will send an email to the responsible person and the applica...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/application/billing_service/",
      "url": "http://localhost/en/application/billing_service/",
      "title": "How to use billing services",
      "content_text": "Overview The NIG supercomputer is operated as a business of the Inter-University Research Institute ...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/application/change_account_info/",
      "url": "http://localhost/en/application/change_account_info/",
      "title": "Change of Account Information",
      "content_text": "If your affiliation or other details change, immediately change of your account information by click...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/application/handling_of_pii/",
      "url": "http://localhost/en/application/handling_of_pii/",
      "title": "Handling of PII",
      "content_text": "Personal information (user name, contact information, etc.) provided when using the NIG supercompute...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/application/invoice/",
      "url": "http://localhost/en/application/invoice/",
      "title": "Payment method of fees",
      "content_text": "Issuing invoices Invoices Invoices will be issued at the beginning of the following month at the end...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/application/password/",
      "url": "http://localhost/en/application/password/",
      "title": "Change password",
      "content_text": "Procedure 1. Click here to go to the login page. 2. The following login screen will de displayed, en...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/application/reference/",
      "url": "http://localhost/en/application/reference/",
      "title": "Contact us",
      "content_text": "Contact for questions about NIG supercomputer applications and the system provided by NIG The follow...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/application/registration/",
      "url": "http://localhost/en/application/registration/",
      "title": "New account registration",
      "content_text": ":::danger This is an old document. Currently, the account application system is being replaced to en...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/application/renewal/",
      "url": "http://localhost/en/application/renewal/",
      "title": "Applying for a renewal of your account of the end of the fiscal year",
      "content_text": "- From 4 January, applying for a renewal of your account of the end of the currnt fiscal year will b...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/application/resource_extension/",
      "url": "http://localhost/en/application/resource_extension/",
      "title": "Submission of Your Usage Plan",
      "content_text": "Usage plan - When you expand your available high-speed storage, or when you use the billing service,...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/application/ssh_copy_id/",
      "url": "http://localhost/en/application/ssh_copy_id/",
      "title": "How to Upload an SSH Public Key",
      "content_text": "The NIG supercomputer uses SSH login with public key cryptography. Please upload your public key to ...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/application/ssh_keys/",
      "url": "http://localhost/en/application/ssh_keys/",
      "title": "How to generate SSH public key",
      "content_text": "The NIG supercomputer uses SSH login with public key cryptography. Currently, ED25519 is generally r...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/application/terms_and_policies/legislation/",
      "url": "http://localhost/en/application/terms_and_policies/legislation/",
      "title": "Related laws and regulations, etc.",
      "content_text": "Foreign Exchange and Foreign Trade Act 1. Foreign Exchange and Foreign Trade Act Article 25 2. The s...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/application/terms_and_policies/terms_of_use_2025/",
      "url": "http://localhost/en/application/terms_and_policies/terms_of_use_2025/",
      "title": "Supercomputer(2025) Terms of Use",
      "content_text": "Terms of Use - Research Organization of Information and Systems Usage Regulations of the NIG Superco...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/application/terms_and_policies/user_issurance_criteria/",
      "url": "http://localhost/en/application/terms_and_policies/user_issurance_criteria/",
      "title": "Issuance criteria for user accounts",
      "content_text": "Target users of the NIG supercomputer As a member of the Inter-University Research Institute Corpora...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/Database/",
      "url": "http://localhost/en/guides/Database/",
      "title": "Database",
      "content_text": "Human Genome Research Dataset Archive Dataset Description Japanese Genotype-phenotype Archive (JGA) ...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/FAQ/faq_application/faq_account_application_system/",
      "url": "http://localhost/en/guides/FAQ/faq_application/faq_account_application_system/",
      "title": "Account Application System",
      "content_text": "I want to logout from the application form for use, but I cannot find the logout button. The red fra...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/FAQ/faq_application/faq_agreement_signing/",
      "url": "http://localhost/en/guides/FAQ/faq_application/faq_agreement_signing/",
      "title": "How to sign the pledge",
      "content_text": "What should I do if I am unable to electrically sign the pledge because I am using a mailer that can...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/FAQ/faq_application/faq_change_StorageCapacity/",
      "url": "http://localhost/en/guides/FAQ/faq_application/faq_change_StorageCapacity/",
      "title": "Change Storage Capacity",
      "content_text": "How can I change my allocated storage space? You need to apply for using large-scale storage. Refer ...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/FAQ/faq_application/faq_renewal/",
      "url": "http://localhost/en/guides/FAQ/faq_application/faq_renewal/",
      "title": "Applying for a renewal of FY",
      "content_text": "Currently, no papers or other deliverables have been published. I have not yet published a paper, wh...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/FAQ/faq_application/faq_usage_plan/",
      "url": "http://localhost/en/guides/FAQ/faq_application/faq_usage_plan/",
      "title": "Usage plan table",
      "content_text": "When I try to download the usage plan table, the following screen will appear on the web browser. If...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/FAQ/faq_general_analysis_division/faq_login_general/",
      "url": "http://localhost/en/guides/FAQ/faq_general_analysis_division/faq_login_general/",
      "title": "Logging in",
      "content_text": "Public key authentication failed. Public key authentication fails if write permission is granted to ...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/FAQ/faq_general_analysis_division/faq_sshkeys_mac/",
      "url": "http://localhost/en/guides/FAQ/faq_general_analysis_division/faq_sshkeys_mac/",
      "title": "SSH public key Registration Procedure(mac)",
      "content_text": "When I typed and executed it, and the output is . OpenSSH client is not installed, so first execute ...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/FAQ/faq_general_analysis_division/faq_sshkeys_windows/",
      "url": "http://localhost/en/guides/FAQ/faq_general_analysis_division/faq_sshkeys_windows/",
      "title": "SSH public key Registration Procedure(Windows)",
      "content_text": "How to install the latest version of PowerShell This division explains how to update the PowerShell ...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/FAQ/faq_os_migration/",
      "url": "http://localhost/en/guides/FAQ/faq_os_migration/",
      "title": "faq_os_migration",
      "content_text": "On this page, questions related to the OS migration during scheduled maintenance in FY2023 are liste...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/FAQ/faq_os_migration/faq_os_migration_env-var/",
      "url": "http://localhost/en/guides/FAQ/faq_os_migration/faq_os_migration_env-var/",
      "title": "Questions related to reinstallation of analysis environments",
      "content_text": "I want to reinstall my analysis environment along with the OS migration. (Ubuntu Linux 22.04) It dep...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/FAQ/faq_os_migration/faq_os_migration_login/",
      "url": "http://localhost/en/guides/FAQ/faq_os_migration/faq_os_migration_login/",
      "title": "Questions about behavior at login",
      "content_text": "After the scheduled maintenance in FY2023, when I tried to qlogin, I got an error . This error can b...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/FAQ/faq_personal_genome/faq_forticlient/",
      "url": "http://localhost/en/guides/FAQ/faq_personal_genome/faq_forticlient/",
      "title": "FAQ: SSL-VPN, FortiClient",
      "content_text": "I don't know how to download the SSL-VPN client software FortiClient. Click on the URL below to acce...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/FAQ/faq_personal_genome/faq_linux_basic/faq_linux_knowledge/",
      "url": "http://localhost/en/guides/FAQ/faq_personal_genome/faq_linux_basic/faq_linux_knowledge/",
      "title": "FAQ：Linux Knowledge",
      "content_text": "The following materials describe the necessary knowledge. Please refer to the links below. 1. Materi...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/FAQ/faq_personal_genome/faq_ssl-vpn_connection/pg_login_ssl-vpn_connection_linux/",
      "url": "http://localhost/en/guides/FAQ/faq_personal_genome/faq_ssl-vpn_connection/pg_login_ssl-vpn_connection_linux/",
      "title": "How to connect to the VPN (Linux)",
      "content_text": "For Linux, connect using the openfortivpn CUI. 1. Specify the configuration file as an argument and ...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/FAQ/faq_personal_genome/faq_ssl-vpn_connection/pg_login_ssl-vpn_connection_mac/",
      "url": "http://localhost/en/guides/FAQ/faq_personal_genome/faq_ssl-vpn_connection/pg_login_ssl-vpn_connection_mac/",
      "title": "How to connect to the VPN (MacOS)",
      "content_text": "For MacOS, connect using the FortiClient GUI. 1. Enter 'User name' and 'Password'. - 'User name': en...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/FAQ/faq_personal_genome/faq_ssl-vpn_connection/pg_login_ssl-vpn_connection_win/",
      "url": "http://localhost/en/guides/FAQ/faq_personal_genome/faq_ssl-vpn_connection/pg_login_ssl-vpn_connection_win/",
      "title": "How to connect to the VPN (Windows)",
      "content_text": "For Windows, connect using the FortiClient GUI. 1. Enter 'User name' and 'Password'. - 'User name': ...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/FAQ/faq_personal_genome/faq_ssl-vpn_install/pg_login_ssl-vpn_install_linux/",
      "url": "http://localhost/en/guides/FAQ/faq_personal_genome/faq_ssl-vpn_install/pg_login_ssl-vpn_install_linux/",
      "title": "Installing the SSL-VPN Client software FortiClient VPN(Linux)",
      "content_text": "For Linux and Windows Subsystem for Linux 2 (WSL2), use the CUI openfortivpn. For the latest version...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/FAQ/faq_personal_genome/faq_ssl-vpn_install/pg_login_ssl-vpn_install_mac/",
      "url": "http://localhost/en/guides/FAQ/faq_personal_genome/faq_ssl-vpn_install/pg_login_ssl-vpn_install_mac/",
      "title": "Installing the SSL-VPN Client software FortiClient VPN(MacOS)",
      "content_text": "Download the SSL-VPN client software \"FortiClient\" Click on the following URL to access the official...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/FAQ/faq_personal_genome/faq_ssl-vpn_install/pg_login_ssl-vpn_install_win/",
      "url": "http://localhost/en/guides/FAQ/faq_personal_genome/faq_ssl-vpn_install/pg_login_ssl-vpn_install_win/",
      "title": "Installing the SSL-VPN Client software FortiClient VPN(Windows)",
      "content_text": "Download the SSL-VPN client software \"FortiClient\" Click on the following URL to access the official...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/FAQ/faq_personal_genome/ssl-vpn_config_file/pg_login_ssl-vpn_configure_file_linux/",
      "url": "http://localhost/en/guides/FAQ/faq_personal_genome/ssl-vpn_config_file/pg_login_ssl-vpn_configure_file_linux/",
      "title": "Configure the SSL-VPN client (Linux)",
      "content_text": "For Linux, configure the SSL-VPN client by creating and saving a configuration file 'config file' us...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/FAQ/faq_personal_genome/ssl-vpn_config_file/pg_login_ssl-vpn_configure_file_mac/",
      "url": "http://localhost/en/guides/FAQ/faq_personal_genome/ssl-vpn_config_file/pg_login_ssl-vpn_configure_file_mac/",
      "title": "Configure the SSL-VPN client (Mac)",
      "content_text": "For Macs, use the FortiClient GUI to configure the SSL-VPN client. 1. Start FortiClient, select Remo...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/FAQ/faq_personal_genome/ssl-vpn_config_file/pg_login_ssl-vpn_configure_file_win/",
      "url": "http://localhost/en/guides/FAQ/faq_personal_genome/ssl-vpn_config_file/pg_login_ssl-vpn_configure_file_win/",
      "title": "Configure the SSL-VPN client (Windows)",
      "content_text": "For Wondows, use the FortiClient GUI to configure the SSL-VPN client. 1. Start FortiClient, select R...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/FAQ/faq_software/faq_archaea_tools/",
      "url": "http://localhost/en/guides/FAQ/faq_software/faq_archaea_tools/",
      "title": "FAQ: Archaea tools(formerly HCPtools)",
      "content_text": "When transferring files, do I always have to specify the transfer source and transfer destination wi...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/FAQ/faq_software/faq_aspera/",
      "url": "http://localhost/en/guides/FAQ/faq_software/faq_aspera/",
      "title": "Aspera",
      "content_text": "Unable to communicate. Since multiple ports (e.g. port 33001 in addition to the ssh port) are used f...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/FAQ/faq_software/faq_bash/",
      "url": "http://localhost/en/guides/FAQ/faq_software/faq_bash/",
      "title": "FAQ: bash",
      "content_text": "What is the order in which shell configuration files such as are loaded? The official information so...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/FAQ/faq_software/faq_scp/",
      "url": "http://localhost/en/guides/FAQ/faq_software/faq_scp/",
      "title": "FAQ: scp etc.",
      "content_text": "I don't know how to transfer files stored on my personal laptop. To scp using PowerShell in Windows,...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/FAQ/faq_software/faq_slurm/",
      "url": "http://localhost/en/guides/FAQ/faq_software/faq_slurm/",
      "title": "FAQ: Slurm",
      "content_text": "I requested to use 128 cores, but it appears that only 32 cores are actually being used. If no speci...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/FAQ/faq_software/faq_ssh/",
      "url": "http://localhost/en/guides/FAQ/faq_software/faq_ssh/",
      "title": "FAQ: SSH",
      "content_text": "Causes and Solutions for the SSH \"Permission denied (publickey)\" Error - \"Client\" means the user's l...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/from_application_to_approval/",
      "url": "http://localhost/en/guides/from_application_to_approval/",
      "title": "How to start using the NIG supercomputer system",
      "content_text": "To use the NIG supercomputer, you need to register your account application before you start using i...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/hardware/ga_lustre/",
      "url": "http://localhost/en/guides/hardware/ga_lustre/",
      "title": "Using Lustre FS",
      "content_text": "The home directories in both the general analysis division and the personal genome analysis division...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/hardware/hardware/",
      "url": "http://localhost/en/guides/hardware/hardware/",
      "title": "Supercomputer (2025 hardware)",
      "content_text": "Overview Classification Specifications Compute Nodes HPC CPU optimized nodes Total number of CPU cor...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/old_docs/Rhelixa_RNAseq_Visualization/",
      "url": "http://localhost/en/guides/old_docs/Rhelixa_RNAseq_Visualization/",
      "title": "RIAS®️ Visualization",
      "content_text": ":::danger This is an old document This service ended on 31 October 2025 (Friday). For more informati...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/old_docs/general_analysis_division/ga_grid_engine_queue_old/",
      "url": "http://localhost/en/guides/old_docs/general_analysis_division/ga_grid_engine_queue_old/",
      "title": "Grid Engine キューの種類",
      "content_text": ":::danger This is an outdated document This document pertains to the former NIG Supercomputer (2019)...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/old_docs/hardware/hardware2019/",
      "url": "http://localhost/en/guides/old_docs/hardware/hardware2019/",
      "title": "Current supercomputers (2019 hardware)",
      "content_text": ":::danger This is an old document This document is a former NIG supercomputer (2019) document and is...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/old_docs/personal_genome_division/Parabricks_old/",
      "url": "http://localhost/en/guides/old_docs/personal_genome_division/Parabricks_old/",
      "title": "Using Parabricks on GPU nodes",
      "content_text": ":::danger This is an outdated document This document pertains to the former NIG Supercomputer (2019)...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/old_docs/resource_extension/",
      "url": "http://localhost/en/guides/old_docs/resource_extension/",
      "title": "Submission of Your Usage Plan",
      "content_text": ":::danger This is an old document This document is a former NIG supercomputer (2019) document and is...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/old_docs/software/CopyTool/CentOS/install_HCPtools_002/",
      "url": "http://localhost/en/guides/old_docs/software/CopyTool/CentOS/install_HCPtools_002/",
      "title": "Installing HCP tools (CentOS 7)",
      "content_text": ":::danger This is an old document This document is a former NIG supercomputer (2019) document and is...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/old_docs/software/CopyTool/hcptools_conf/",
      "url": "http://localhost/en/guides/old_docs/software/CopyTool/hcptools_conf/",
      "title": "How to write the configuration file",
      "content_text": "Configuration file types There is a configuration file for each of the HCP tools commands. | #| comm...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/old_docs/software/JobScheduler/grid_engine/",
      "url": "http://localhost/en/guides/old_docs/software/JobScheduler/grid_engine/",
      "title": "Grid Engine Overview",
      "content_text": ":::danger This is an old document This document is a former NIG supercomputer (2019) document and is...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/old_docs/software/JobScheduler/grid_engine/array_jobs/",
      "url": "http://localhost/en/guides/old_docs/software/JobScheduler/grid_engine/array_jobs/",
      "title": "Array Jobs(array job)",
      "content_text": ":::danger This is an old document This document is a former NIG supercomputer (2019) document and is...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/old_docs/software/JobScheduler/grid_engine/batch_job2/",
      "url": "http://localhost/en/guides/old_docs/software/JobScheduler/grid_engine/batch_job2/",
      "title": "Example of batch job execution",
      "content_text": ":::danger This is an old document This document is a former NIG supercomputer (2019) document and is...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/old_docs/software/JobScheduler/grid_engine/batch_jobs/",
      "url": "http://localhost/en/guides/old_docs/software/JobScheduler/grid_engine/batch_jobs/",
      "title": "Batch Jobs (batch job)",
      "content_text": ":::danger This is an old document This document is a former NIG supercomputer (2019) document and is...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/old_docs/software/JobScheduler/grid_engine/interactive_jobs/",
      "url": "http://localhost/en/guides/old_docs/software/JobScheduler/grid_engine/interactive_jobs/",
      "title": "Interactive Jobs (interactive job)",
      "content_text": ":::danger This is an old document This document is a former NIG supercomputer (2019) document and is...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/old_docs/software/JobScheduler/grid_engine/other_commands/",
      "url": "http://localhost/en/guides/old_docs/software/JobScheduler/grid_engine/other_commands/",
      "title": "Other Commands",
      "content_text": ":::danger This is an old document This document is a former NIG supercomputer (2019) document and is...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/old_docs/software/JobScheduler/grid_engine/parallel_jobs/",
      "url": "http://localhost/en/guides/old_docs/software/JobScheduler/grid_engine/parallel_jobs/",
      "title": "Parallel Jobs (parallel job)",
      "content_text": ":::danger This is an old document This document is a former NIG supercomputer (2019) document and is...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/old_docs/terms_of_use_2019/",
      "url": "http://localhost/en/guides/old_docs/terms_of_use_2019/",
      "title": "Supercomputer (2019) Terms of Use",
      "content_text": ":::danger This is an old document This document is a former NIG supercomputer (2019) document and is...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/overview/",
      "url": "http://localhost/en/guides/overview/",
      "title": "System Architecture",
      "content_text": "The NIG supercomputer system started its sixth phase of operation in March 2025. This system is inte...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/security-policy/",
      "url": "http://localhost/en/guides/security-policy/",
      "title": "Information Security Policy (ISO27001)",
      "content_text": "The official version of this document is the Japanese text. The English translation is provided only...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/security_policy/ISMS_Certificate/",
      "url": "http://localhost/en/guides/security_policy/ISMS_Certificate/",
      "title": "ISMS Certificate",
      "content_text": "Division of High Performance Computing and Division of Internal Affairs in Bioinformation and DDBJ C...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/software/",
      "url": "http://localhost/en/guides/software/",
      "title": "Software",
      "content_text": "Refer to the links for each software for detailed usage instructions. Job Scheduler A job scheduler ...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/software/AnalysisPipeline/",
      "url": "http://localhost/en/guides/software/AnalysisPipeline/",
      "title": "Analysis pipeline",
      "content_text": "area name the general analysis division the personal genome analysis division DFAST available availa...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/software/Container/Apptainer/",
      "url": "http://localhost/en/guides/software/Container/Apptainer/",
      "title": "Apptainer (Singularity)",
      "content_text": "(Singularity has been renamed Apptainer.) Introduction Apptainer (Sigularity) containers are availab...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/software/Container/BioContainers/",
      "url": "http://localhost/en/guides/software/Container/BioContainers/",
      "title": "BioContainers Apptainer (Singularity) Images",
      "content_text": "Introduce Biocontainers Singularity Images Singularity container images created by the BioContainers...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/software/Container/spack/install_spack/",
      "url": "http://localhost/en/guides/software/Container/spack/install_spack/",
      "title": "Installing spack",
      "content_text": "Spack is a package manager available with user permission. For example, spack allows installation an...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/software/Container/spack/use_spack/",
      "url": "http://localhost/en/guides/software/Container/spack/use_spack/",
      "title": "How to use spack",
      "content_text": "Spack is a package manager available with user permission. References: - Spack Official Web Site - S...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/software/CopyTool/Archaea_tools/",
      "url": "http://localhost/en/guides/software/CopyTool/Archaea_tools/",
      "title": "How to use Archaea tools",
      "content_text": "To upload and download files to and from the NIG supercomputer, you can generally use widely-used fi...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/software/CopyTool/aspera_client/",
      "url": "http://localhost/en/guides/software/CopyTool/aspera_client/",
      "title": "How to use Aspera client(ascp)",
      "content_text": "Overview Aspera is a high-speed data transfer software. It can be used to download data from major r...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/software/CopyTool/sratoolkit/",
      "url": "http://localhost/en/guides/software/CopyTool/sratoolkit/",
      "title": "How to use SraToolkit",
      "content_text": "Introduction prefetch is par of the SRA Tools provided by NCBI and is a command line tool for pre-do...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/software/DevelopmentEnvironment/R/",
      "url": "http://localhost/en/guides/software/DevelopmentEnvironment/R/",
      "title": "R",
      "content_text": "This article explains the methods for installing the R environment on the user environment of the Na...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/software/DevelopmentEnvironment/R/r_studio_server/",
      "url": "http://localhost/en/guides/software/DevelopmentEnvironment/R/r_studio_server/",
      "title": "RStudio Server",
      "content_text": "How to Use RStudio Server in a User Environment RStudio Server is a web server-based RStudio environ...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/software/DevelopmentEnvironment/Rust/rust/",
      "url": "http://localhost/en/guides/software/DevelopmentEnvironment/Rust/rust/",
      "title": "Rust",
      "content_text": "Installing the Rust processor Rust can be installed with user permission, so install the version you...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/software/DevelopmentEnvironment/TypeScript/typescript/",
      "url": "http://localhost/en/guides/software/DevelopmentEnvironment/TypeScript/typescript/",
      "title": "Node.js, TypeScript",
      "content_text": "How to use TypeScript Installing the Node.js processor Node.js, the server-side JavaScript processor...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/software/DevelopmentEnvironment/cuda/",
      "url": "http://localhost/en/guides/software/DevelopmentEnvironment/cuda/",
      "title": "CUDA",
      "content_text": "Reference: - Official documentation: https://docs.nvidia.com/cuda/ :::info Currently, the number of ...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/software/DevelopmentEnvironment/gcc/",
      "url": "http://localhost/en/guides/software/DevelopmentEnvironment/gcc/",
      "title": "C/C++ (GCC: GNU Compiler Collection)",
      "content_text": "GCC version: status of support for C and C++ language standards The GCC versions and the conforming ...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/software/DevelopmentEnvironment/go/",
      "url": "http://localhost/en/guides/software/DevelopmentEnvironment/go/",
      "title": "Go",
      "content_text": "Go is not installed on the NIG supercomputer. You need to install Go by yourself. The following desc...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/software/DevelopmentEnvironment/intel_compiler/",
      "url": "http://localhost/en/guides/software/DevelopmentEnvironment/intel_compiler/",
      "title": "C/C++ (Intel Compiler)",
      "content_text": "The NIG supercomputer system has installed the Intel oneAPI Base & HPC Toolkit Multi-node, enabling ...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/software/DevelopmentEnvironment/intel_compiler/intel_compiler_AILib/",
      "url": "http://localhost/en/guides/software/DevelopmentEnvironment/intel_compiler/intel_compiler_AILib/",
      "title": "AI Library",
      "content_text": "Intel OneCCL (Collective Communications Library) A high-performance communication library for distri...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/software/DevelopmentEnvironment/intel_compiler/intel_compiler_NumCalc/",
      "url": "http://localhost/en/guides/software/DevelopmentEnvironment/intel_compiler/intel_compiler_NumCalc/",
      "title": "Numeric Calculation",
      "content_text": "Intel oneMKL (Math Kernel Library) The NIG supercomputer allows the use of the Intel Math Kernel Lib...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/software/DevelopmentEnvironment/intel_compiler/intel_compiler_OtherLanguages/",
      "url": "http://localhost/en/guides/software/DevelopmentEnvironment/intel_compiler/intel_compiler_OtherLanguages/",
      "title": "Other Languages",
      "content_text": "Intel Fortran Compiler Intel's Fortran compiler. - Added support for the Fortran 2023 standard. - En...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/software/DevelopmentEnvironment/intel_compiler/intel_compiler_ParallelComLib/",
      "url": "http://localhost/en/guides/software/DevelopmentEnvironment/intel_compiler/intel_compiler_ParallelComLib/",
      "title": "Parallel Computing Library",
      "content_text": "Intel MPI Library Intel's MPI implementation. - Product page by the distributor - Developer's guide ...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/software/DevelopmentEnvironment/intel_compiler/intel_compiler_debugger/",
      "url": "http://localhost/en/guides/software/DevelopmentEnvironment/intel_compiler/intel_compiler_debugger/",
      "title": "Debugger",
      "content_text": "Intel Distribution for GDB A version of GDB that includes additional features for debugging on Intel...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/software/DevelopmentEnvironment/intel_compiler/intel_compiler_profiler/",
      "url": "http://localhost/en/guides/software/DevelopmentEnvironment/intel_compiler/intel_compiler_profiler/",
      "title": "Profiler",
      "content_text": "Intel Advisor Intel Advisor is a high-performance vectorization and threading optimization tool for ...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/software/DevelopmentEnvironment/java/",
      "url": "http://localhost/en/guides/software/DevelopmentEnvironment/java/",
      "title": "Java の使い方",
      "content_text": "Java 処理系のインストール Java 処理系 (JDK)のイン--- id: java title: \"Java\" --- Installing the Java processor The Ja...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/software/DevelopmentEnvironment/jupyter_lab/",
      "url": "http://localhost/en/guides/software/DevelopmentEnvironment/jupyter_lab/",
      "title": "Jupyter Lab",
      "content_text": "Jupyter Lab was implemented based on Jupyter Notebook. Jupyter Lab provides better usability and sup...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/software/DevelopmentEnvironment/jupyter_notebook/",
      "url": "http://localhost/en/guides/software/DevelopmentEnvironment/jupyter_notebook/",
      "title": "Jupyter Notebook",
      "content_text": "Jupyter Notebook is installed on the system. Follow the instruction below to use.[^1] [^1]:Jupyter L...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/software/DevelopmentEnvironment/pgi_compiler/",
      "url": "http://localhost/en/guides/software/DevelopmentEnvironment/pgi_compiler/",
      "title": "C/C++ (NVIDIA HPC Compiler)",
      "content_text": "As of February 2024, the genetic research supercomputer system has implemented NVIDIA HPC SDK 23.7. ...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/software/DevelopmentEnvironment/python/",
      "url": "http://localhost/en/guides/software/DevelopmentEnvironment/python/",
      "title": "Python",
      "content_text": "Python processors are installed from the outset on the NIG supercomputer. You can also install Pytho...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/software/JobScheduler/Slurm/",
      "url": "http://localhost/en/guides/software/JobScheduler/Slurm/",
      "title": "How to use Slurm",
      "content_text": "Slurm is a type of program known as a job scheduler or resource scheduler, which automatically alloc...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/software/JobScheduler/Slurm/array_jobs/",
      "url": "http://localhost/en/guides/software/JobScheduler/Slurm/array_jobs/",
      "title": "Submitting array jobs",
      "content_text": "When you want to submit a large number of jobs (batch or parallel jobs) to the system at once, pleas...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/software/JobScheduler/Slurm/batch_jobs/",
      "url": "http://localhost/en/guides/software/JobScheduler/Slurm/batch_jobs/",
      "title": "Batch Jobs",
      "content_text": "How to Use Batch Jobs Batch jobs should be executed as batch jobs when running a small number of pro...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/software/JobScheduler/Slurm/interactive_jobs/",
      "url": "http://localhost/en/guides/software/JobScheduler/Slurm/interactive_jobs/",
      "title": "Interactive Jobs",
      "content_text": "When you need an interactive job, for instance, to perform calculations using a large amount of memo...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/software/JobScheduler/Slurm/other_commands/",
      "url": "http://localhost/en/guides/software/JobScheduler/Slurm/other_commands/",
      "title": "Other Commands",
      "content_text": "How to Use GPUs In the personal genome analysis section, GPU compute nodes are operated by allocatin...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/software/JobScheduler/Slurm/parallel_jobs/",
      "url": "http://localhost/en/guides/software/JobScheduler/Slurm/parallel_jobs/",
      "title": "Parallel Jobs",
      "content_text": "When running programs that utilize multiple CPU cores simultaneously for extended periods, please ex...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/software/JobScheduler/Slurm/slurm_time/",
      "url": "http://localhost/en/guides/software/JobScheduler/Slurm/slurm_time/",
      "title": "Specifying Job Time in Slurm",
      "content_text": "Overview In Slurm, you need to specify the job time limit yourself. - If you do not specify the time...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/software/software_update_info/",
      "url": "http://localhost/en/guides/software/software_update_info/",
      "title": "Software Update Information",
      "content_text": "Software update frequency - For shared nodes. - Twice a year, the software is updated. (around June ...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/top_page/",
      "url": "http://localhost/en/guides/top_page/",
      "title": "NIG Supercomputer(2025)",
      "content_text": "The National Institute of Genetics (NIG) provides a cutting-edge supercomputer system equipped with ...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/using_general_analysis_division/",
      "url": "http://localhost/en/guides/using_general_analysis_division/",
      "title": "Using General Analysis Division",
      "content_text": "System configuration of the general analysis division The general analysis division of NIG supercomp...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/using_general_analysis_division/ga_advance_reservation/",
      "url": "http://localhost/en/guides/using_general_analysis_division/ga_advance_reservation/",
      "title": "advance reservation",
      "content_text": "Overview Advance Reservation is a service that users reserve a certain range of resources in the Gri...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/using_general_analysis_division/ga_application/",
      "url": "http://localhost/en/guides/using_general_analysis_division/ga_application/",
      "title": "Preparation for use (The General Analysis division)",
      "content_text": "Steps from account application to start of use For issuance criteria of user account, check the 'Iss...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/using_general_analysis_division/ga_grid_engine_queue/",
      "url": "http://localhost/en/guides/using_general_analysis_division/ga_grid_engine_queue/",
      "title": "Grid Engine Queue Type",
      "content_text": ":::danger This is an old document This document is a former NIG supercomputer (2019) document and is...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/using_general_analysis_division/ga_interactive_login/",
      "url": "http://localhost/en/guides/using_general_analysis_division/ga_interactive_login/",
      "title": "How to Login to the Interactive node (The general analysis division)",
      "content_text": "Introduction :::caution The following procedure is temporary, due to the transition to the Next-Gene...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/using_general_analysis_division/ga_login/",
      "url": "http://localhost/en/guides/using_general_analysis_division/ga_login/",
      "title": "How to Login to the Gateway node (The general analysis division)",
      "content_text": "Introduction SSH connection is used for logging in to the general analysis division of the NIG super...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/using_general_analysis_division/ga_slurm_partition/",
      "url": "http://localhost/en/guides/using_general_analysis_division/ga_slurm_partition/",
      "title": "Slurm Partitions（The general analysis division）",
      "content_text": "The compute nodes managed by the Slurm job scheduler are broadly categorised into interactive nodes ...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/using_general_analysis_division/ga_transfer/",
      "url": "http://localhost/en/guides/using_general_analysis_division/ga_transfer/",
      "title": "Data file transfer（The general analysis division）",
      "content_text": "In addition to commonly used protocols such as SCP and SFTP, the NIG supercomputer also supports Asp...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/using_general_analysis_division/largescale_storage/",
      "url": "http://localhost/en/guides/using_general_analysis_division/largescale_storage/",
      "title": "Using large-scale storage",
      "content_text": "When you start using this service, check Terms of Use and Appendix for Rules of Use (table of charge...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/using_personal_genome_division/",
      "url": "http://localhost/en/guides/using_personal_genome_division/",
      "title": "Using Personal Genome Division",
      "content_text": "About the Personal Genome Analysis division The NIG supercomputer delivers the personal genome analy...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/using_personal_genome_division/CPU_nodes/",
      "url": "http://localhost/en/guides/using_personal_genome_division/CPU_nodes/",
      "title": "How to Use CPU Nodes in the Personal Genome Analysis Division",
      "content_text": "(This page is being prepared and will be available soon.)",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/using_personal_genome_division/GPU_nodes_type2/",
      "url": "http://localhost/en/guides/using_personal_genome_division/GPU_nodes_type2/",
      "title": "Using the Accelerator-optimised node Type 2 (L40S Node)",
      "content_text": "The Accelerator-Optimized Node Type 2 is a compute node equipped with eight NVIDIA L40S GPUs per nod...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/using_personal_genome_division/Parabricks/",
      "url": "http://localhost/en/guides/using_personal_genome_division/Parabricks/",
      "title": "Preparation for Using Parabricks",
      "content_text": "Overview This guide explains how to run genome analysis using Parabricks on the GPU nodes of the NIG...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/using_personal_genome_division/Parabricks/parabricks_fq2bam/",
      "url": "http://localhost/en/guides/using_personal_genome_division/Parabricks/parabricks_fq2bam/",
      "title": "Running fq2bam with Parabricks",
      "content_text": "Application for Access To run Parabricks, GPU compute nodes are required. Currently, due to the limi...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/using_personal_genome_division/Parabricks/parabricks_setup/",
      "url": "http://localhost/en/guides/using_personal_genome_division/Parabricks/parabricks_setup/",
      "title": "Preparation for Using Parabricks",
      "content_text": "Applying for Access Parabricks requires access to GPU compute nodes. Due to the limited number of av...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/using_personal_genome_division/group_cloud/",
      "url": "http://localhost/en/guides/using_personal_genome_division/group_cloud/",
      "title": "DDBJ Group Cloud",
      "content_text": "DDBJ Group Cloud is a service for sharing data that requires access restrictions, including personal...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/using_personal_genome_division/job_submission_notes/",
      "url": "http://localhost/en/guides/using_personal_genome_division/job_submission_notes/",
      "title": "Notes on Job Submission in the Personal Genome Analysis Division",
      "content_text": "When using Parabricks (a job that utilizes GPUs) in the personal genome analysis division, even if t...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/using_personal_genome_division/pg_application/",
      "url": "http://localhost/en/guides/using_personal_genome_division/pg_application/",
      "title": "Preparation for use（The Personal Genome Analysis division）",
      "content_text": "Preparation of user's computer The personal genome analysis division of NIG supercomputer can be use...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/using_personal_genome_division/pg_data_transfer/",
      "url": "http://localhost/en/guides/using_personal_genome_division/pg_data_transfer/",
      "title": "Data file transfer（The Personal Genome Analysis division）",
      "content_text": ":::caution The Archaea tools server for the Personal Genome Analysis Division is currently being pre...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/using_personal_genome_division/pg_login/",
      "url": "http://localhost/en/guides/using_personal_genome_division/pg_login/",
      "title": "How to Login（The Personal Genome Analysis division）",
      "content_text": "Introduction SSL-VPN connection is used for login and file transfer to the personal genome analysis ...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/guides/using_personal_genome_division/pg_overview/",
      "url": "http://localhost/en/guides/using_personal_genome_division/pg_overview/",
      "title": "Overview of How to Use the personal genome analysis division",
      "content_text": "- For security reasons, users are generally required to use dedicated (exclusive) compute nodes in t...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/operation/job_queue_status/",
      "url": "http://localhost/en/operation/job_queue_status/",
      "title": "Waiting time until starting execution",
      "content_text": "In the line graph below, queueing time is the waiting time until starting execution. - The waiting t...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/operation/power_consumption/",
      "url": "http://localhost/en/operation/power_consumption/",
      "title": "Power consumption of the NIG supercomputer",
      "content_text": "This graph shows the power consumption of the NIG supercomputer. - Top (yellow): Cooling System - Bo...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/report/institution/accounts_by_institution_2023/",
      "url": "http://localhost/en/report/institution/accounts_by_institution_2023/",
      "title": "Number of accounts by institution (as of December 31, 2023)",
      "content_text": "Aggregated only for universities and public research institutions (companies are not dixcclosed). Na...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/report/institution/accounts_by_institution_2024/",
      "url": "http://localhost/en/report/institution/accounts_by_institution_2024/",
      "title": "Number of accounts by institution (as of December 31, 2024)",
      "content_text": "Aggregated only for universities and public research institutions (companies are not dixcclosed). Na...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/report/institution/accounts_by_institution_2025/",
      "url": "http://localhost/en/report/institution/accounts_by_institution_2025/",
      "title": "Number of accounts by institution (as of December 31, 2025)",
      "content_text": "Aggregated only for universities and public research institutions (companies are not disclosed). Nam...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/report/papers/papers_2012/",
      "url": "http://localhost/en/report/papers/papers_2012/",
      "title": "Published Papers(2012)",
      "content_text": "List of papers published by users January 1st, 2012 -- December 31st, 2012 Papers compiled at the en...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/report/papers/papers_2013/",
      "url": "http://localhost/en/report/papers/papers_2013/",
      "title": "Published Papers(2013)",
      "content_text": "List of papers published by users January 1st, 2013 -- December 31st, 2013 Papers compiled at the en...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/report/papers/papers_2014/",
      "url": "http://localhost/en/report/papers/papers_2014/",
      "title": "Published Papers(2014)",
      "content_text": "List of papers published by users January 1st, 2014 -- December 31st, 2014 Papers compiled at the en...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/report/papers/papers_2015/",
      "url": "http://localhost/en/report/papers/papers_2015/",
      "title": "Published Papers(2015)",
      "content_text": "List of papers published by users January 1st, 2015 -- December 31st, 2015 Papers compiled at the en...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/report/papers/papers_2016/",
      "url": "http://localhost/en/report/papers/papers_2016/",
      "title": "Published Papers(2016)",
      "content_text": "List of papers published by users January 1st, 2016 -- December 31st, 2016 Papers compiled at the en...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/report/papers/papers_2017/",
      "url": "http://localhost/en/report/papers/papers_2017/",
      "title": "Published Papers(2017)",
      "content_text": "List of papers published by users January 1st, 2017 -- December 31st, 2017 Papers compiled at the en...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/report/papers/papers_2018/",
      "url": "http://localhost/en/report/papers/papers_2018/",
      "title": "Published Papers(2018)",
      "content_text": "List of papers published by users January 1st, 2018 -- December 31st, 2018 Papers compiled at the en...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/report/papers/papers_2019/",
      "url": "http://localhost/en/report/papers/papers_2019/",
      "title": "Published Papers(2019)",
      "content_text": "List of papers published by users January 1st, 2019 -- December 31st, 2019 Papers compiled at the en...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/report/papers/papers_2020/",
      "url": "http://localhost/en/report/papers/papers_2020/",
      "title": "Published Papers(2020)",
      "content_text": "List of papers published by users January 1st, 2020 -- December 31st, 2020 Papers compiled at the en...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/report/papers/papers_2021/",
      "url": "http://localhost/en/report/papers/papers_2021/",
      "title": "Published Papers(2021)",
      "content_text": "List of papers published by users January 1st, 2021 -- December 31st, 2021 Papers compiled at the en...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/report/papers/papers_2022/",
      "url": "http://localhost/en/report/papers/papers_2022/",
      "title": "Published Papers(2022)",
      "content_text": "List of papers published by users January 1st, 2022 -- December 31st, 2022 Papers compiled at the en...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/report/papers/papers_2023/",
      "url": "http://localhost/en/report/papers/papers_2023/",
      "title": "Published Papers(2023)",
      "content_text": "List of papers published by users January 1st, 2023 -- December 31st, 2023 Papers compiled at the en...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/report/papers/papers_2024/",
      "url": "http://localhost/en/report/papers/papers_2024/",
      "title": "Published Papers(2024)",
      "content_text": "List of papers published by users January 1st, 2024 -- December 31st, 2024 Papers compiled at the en...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    },
    {
      "id": "http://localhost/en/report/statistics/",
      "url": "http://localhost/en/report/statistics/",
      "title": "Statistics",
      "content_text": "Number of users Aggregate date login user (normal) login user (large scale) DDBJ SE Total 12-31-2012...",
      "date_published": "2026-04-03T08:57:08.128386278Z"
    }
  ]
}