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2017 年 12 月 12 日
 

利用可能オープンソースソフトウェア

スーパーコンピュータシステムにインストール済みのオープンソースソフトウェアとなります。
一覧に希望ソフトウェアが無い場合は、原則以下の判断基準に従い審査を行った上で受け付けております。
・スーパーコンピュータシステム OSSインストール基準

ソフトウェア登録申請は以下フォームからお願いします。
・スーパーコンピュータシステム OSSインストール申請

ライフサイエンス関連


シンボリックリンク 標準   T (thin) F (fat) M (medium) G (gpu):インストールノード

 名称バージョンPATH
TFMG

インストール日時

備考
ALLPATHS-LG 52488 /usr/local/pkg/ALLPATHS-LG/52488 2015/08/04 17:59  
/usr/local/pkg/ALLPATHS-LG/current 2015/08/04 17:59  
/usr/local/bin 2015/08/04 17:59  
51927 /usr/local/pkg/ALLPATHS-LG/51927 2015/02/20 16:12  
50095 /usr/local/pkg/ALLPATHS-LG/50095 2014/07/10 14:04  
49856 /usr/local/pkg/ALLPATHS-LG/49856 2014/06/05 11:40  
47141 /usr/local/pkg/ALLPATHS-LG/47141 2013/07/22 14:17  
43436 /usr/local/pkg/ALLPATHS-LG/43436  ○  ○  ○  ○ 2012/10/24 10:44  
41554 /usr/local/pkg/ALLPATHS-LG/41554  ○  ○  ○  ○ 2012/04/25 10:27 ph1のみ
41353 /usr/local/pkg/ALLPATHS-LG/41353 2012/04/25 10:11 ph1のみ
augustus 3.3 /usr/local/pkg/augustus/3.3 2017/10/18 16:17  
3.2.3 /usr/local/pkg/augustus/3.2.3 2017/02/15 14:28  
/usr/local/pkg/augustus/current 2017/02/15 14:28  
3.2.2 /usr/local/pkg/augustus/3.2.2 2016/10/31 14:43  
3.2.1 /usr/local/pkg/augustus/3.2.1 2016/03/23 13:36  
3.2 /usr/local/pkg/augustus/3.2 2015/11/02 17:06  
3.1 /usr/local/pkg/augustus/3.1 2015/08/24 17:40  
3.0.3 /usr/local/pkg/augustus/3.0.3 2015/04/21 14:23  
bamtools  2.4.1  /usr/local/pkg/bamtools/2.4.1 2017/02/15 14:05  
/usr/local/pkg/bamtools/current 2017/02/15 14:05  
2.4.0 /usr/local/pkg/bamtools/2.4.0 2015/08/24 17:40  
2.3.0
/usr/local/pkg/bamtools/2.3.0 2015/04/21 13:46  
BEDTools 2.17.0 /usr/local/pkg/BEDTools/2.17.0  ○  ○  ○  ○ 2014/07/10 14:07  
/usr/local/pkg/BEDTools/current 2014/07/10 14:07  
/usr/local/bin 2014/07/10 14:07  
2.16.2 /usr/local/pkg/BEDTools/2.16.2 2012/05/23 11:52  
Blat 35 /usr/local/pkg/BLAT/35 2014/07/10 14:10  
/usr/local/pkg/BLAT/current 2014/07/10 14:10  
34 /usr/local/pkg/BLAT/34 2012/06/26 10:34  
Bowtie 1.2.1.1 /usr/local/pkg/bowtie/bowtie-1.2.1.1 2017/10/19 13:29  
1.1.2 /usr/local/pkg/bowtie/bowtie-1.1.2 2015/11/02 17:06  
/usr/local/pkg/bowtie/current 2015/11/02 17:06  
/usr/local/bin 2015/11/02 17:06  
1.1.1 /usr/local/pkg/bowtie/bowtie-1.1.1 2015/02/20 16:12  
1.0.1 /usr/local/pkg/bowtie/bowtie-1.0.1 2014/07/10 14:32  
0.12.8 /usr/local/pkg/bowtie/bowtie-0.12.8 2012/07/09 10:31  
0.12.7  /usr/local/pkg/bowtie/bowtie-0.12.7 ○  ○  ○  ○  2012/02/07 18:03  
Bowtie2 2.3.3.1 /usr/local/pkg/bowtie2/2.3.3.1 ○  ○  ○  ○  2017/10/19 13:36  
2.3.2 /usr/local/pkg/bowtie2/2.3.2 ○  ○  ○  ○  2016/10/31 15:27  
/usr/local/pkg/bowtie2/current 2016/10/31 15:27  
/usr/local/bin 2016/10/31 15:27  
2.2.9 /usr/local/pkg/bowtie2/2.2.9 2016/10/31 15:27  
2.2.8 /usr/local/pkg/bowtie2/2.2.8 2016/03/16 14:53  
2.2.6 /usr/local/pkg/bowtie2/2.2.6 2015/11/06 17:06  
2.2.5 /usr/local/pkg/bowtie2/2.2.5 2015/08/24 17:40  
2.2.4 /usr/local/pkg/bowtie2/2.2.4 2015/02/20 16:12  
2.2.3 /usr/local/pkg/bowtie2/2.2.3 2014/07/10 14:34  
2.2.2 /usr/local/pkg/bowtie2/2.2.2 2014/05/12 10:30  
2.0.0-beta7 /usr/local/pkg/bowtie2/2.0.0-beta7 2012/10/18 10:50  
2.0.0-beta6  /usr/local/pkg/bowtie2/2.0.0-beta6 2012/07/09 10:53  
BWA 0.7.16a /usr/local/pkg/bwa/0.7.16a 2017/10/19 14:00  
0.7.15 /usr/local/pkg/bwa/0.7.15 2016/10/31 15:31  
/usr/local/pkg/bwa/current 2016/10/31 15:31  
/usr/local/bin 2016/10/31 15:31  
0.7.13 /usr/local/pkg/bwa/0.7.13 2016/03/23 14:36  
0.7.12 /usr/local/pkg/bwa/0.7.12 2015/02/20 16:12  
0.7.9a /usr/local/pkg/bwa/0.7.9a 2014/07/10 14:37  
0.7.8 /usr/local/pkg/bwa/0.7.8 2014/06/09 16:31  
0.6.1 /usr/local/pkg/bwa/0.6.1 2012/02/07 11:09  
0.5.9 /usr/local/pkg/bwa/0.5.9 2012/02/07 11:07  
canu 1.6 /usr/local/pkg/canu/v1.6 2017/10/19 14:22  
1.5 /usr/local/pkg/canu/v1.5 2017/05/18 15:42  
/usr/local/pkg/canu/current 2017/05/18 15:42  
circos 0.69-6 /usr/local/pkg/circos/0.69-6 2017/10/19 14:36  
0.69-5 /usr/local/pkg/circos/0.69-5 2017/06/12 11:11  
/usr/local/pkg/circos/current 2017/06/12 11:11  
0.69 /usr/local/pkg/circos/0.69 2016/03/16 15:39  
0.68 /usr/local/pkg/circos/0.68 2015/11/02 17:06  
0.67 /usr/local/pkg/circos/0.67 2015/03/19 13:30  
ClustalW 1.83 /usr/local/pkg/ClustalW/1.83 2012/06/05 09:54  
/usr/local/bin 2012/06/05 09:54  
1.83_ddbj /usr/local/pkg/ClustalW/1.83_ddbj  ○  ○  ○  ○ 2012/06/05 13:29  
ClustalW2 2.1 /usr/local/pkg/clustalw2/2.1 2014/03/19 13:24  
/usr/local/pkg/clustalw2/current 2014/03/19 13:24  
/usr/local/bin 2014/03/19 13:24  
Cufflinks 2.2.1 /usr/local/pkg/Cufflinks/2.2.1  ○  ○  ○  ○ 2014/06/05 09:31  
/usr/local/pkg/Cufflinks/current 2014/06/05 13:31  
/usr/local/bin 2014/06/05 09:31  
2.1.1 /usr/local/pkg/Cufflinks/2.1.1 2015/09/01 13:44  
2.0.1 /usr/local/pkg/Cufflinks/2.0.1 2012/07/09 10:44  
2.0.0  /usr/local/pkg/Cufflinks/2.0.0  ○  ○  ○  ○ 2012/05/18 10:47  
cutadapt 1.14 /usr/local/pkg/cutadapt/1.14 2017/10/19 15:09  
1.8.1 /usr/local/pkg/cutadapt/1.8.1 2015/08/24 17:40  
/usr/local/pkg/cutadapt/current 2015/08/24 17:40  
/usr/local/bin 2015/08/24 17:40  
1.7.1 /usr/local/pkg/cutadapt/1.7.1 2015/02/20 16:12  
1.0 /usr/local/pkg/cutadapt/1.0 2012/05/18 13:20  
Edena 3.131028 /usr/local/pkg/edena/V3.131028 2015/02/20 16:12  
/usr/local/pkg/edena/current 2015/02/20 16:12  
3DEV110920 /usr/local/pkg/edena/Edena3DEV110920_linux64  ○  ○  ○ 2012/02/03 17:58  
edena2.1.1_linux64 /usr/local/pkg/edena/edena2.1.1_linux64  ○  ○  ○  ○ 2012/02/03 17:57  
express 1.5.1 /usr/local/pkg/express/1.5.1 2014/08/05 14:27  
/usr/local/pkg/express/current 2014/08/05 14:27  
FASTA 36.3.8f /usr/local/pkg/fasta/36.3.8f 2017/10/19 15:49  
36.3.8e /usr/local/pkg/fasta/36.3.8e 2016/10/31 15:40  
/usr/local/pkg/fasta/current 2016/10/31 15:40  
/usr/local/bin 2016/10/31 15:40  
36.3.8c /usr/local/pkg/fasta/36.3.8c 2016/03/16 16:26  
36.3.8 /usr/local/pkg/fasta/36.3.8 2015/11/02 17:06  
36.3.7b /usr/local/pkg/fasta/36.3.7b 2015/08/24 17:40  
36.3.7a /usr/local/pkg/fasta/36.3.7a 2015/02/20 16:12  
36.3.5c /usr/local/pkg/fasta/36.3.5c  ○  ○  ○ 2012/04/06 16:41  
36.3.5a  /usr/local/pkg/fasta/36.3.5a  ○  ○  ○  ○ 2012/02/08 09:12  
GATK 3.8-0-ge9d806836 /usr/local/pkg/GATK/3.8-0-ge9d806836  ○  ○  ○  ○ 2017/10/20 11:26  
1.6-9-g47df7bb /usr/local/pkg/GATK/1.6-9-g47df7bb  ○  ○  ○  ○ 2014/07/10 14:13  
/usr/local/pkg/GATK/current 2014/07/10 14:13  
1.6-5-g557da77 /usr/local/pkg/GATK/1.6-5-g557da77 2012/05/18 18:00  
gmap 2017-09-30 /usr/local/pkg/gmap/2017-09-30 2017/10/20 11:42  
2017-05-08 /usr/local/pkg/gmap/2017-05-08 2017/06/12 13:45  
/usr/local/pkg/gmap/current 2017/06/12 13:45  
2015-12-31 /usr/local/pkg/gmap/2015-12-31 2016/03/23 16:00  
2015-09-29 /usr/local/pkg/gmap/2015-09-29 2015/11/02 17:06  
2014-06-10 /usr/local/pkg/gmap/2014-06-10 2014/06/17 14:44  
Hmmer 3.1b2 /usr/local/pkg/hmmer/3.1b2 2015/08/24 17:40  
/usr/local/pkg/hmmer/current 2015/08/24 17:40  
/usr/local/bin 2015/08/24 17:40  
3.1b1 /usr/local/pkg/hmmer/3.1b1 2015/02/20 16:12  
IGV 2.4.2 /usr/local/pkg/IGVviewer/2.4.2 2017/10/20 11:56  
2.3.94 /usr/local/pkg/IGVviewer/2.3.94 2017/06/12 14:11  
/usr/local/pkg/IGVviewer/current 2017/06/12 14:11  
2.3.83 /usr/local/pkg/IGVviewer/2.3.83 2016/10/31 14:04  
2.3.69 /usr/local/pkg/IGVviewer/2.3.69 2016/03/16 14:30  
2.3.61 /usr/local/pkg/IGVviewer/2.3.61 2015/11/02 17:06  
2.3.57 /usr/local/pkg/IGVviewer/2.3.57 2015/08/24 17:40  
2.3.40 /usr/local/pkg/IGVviewer/2.3.40 2015/02/20 16:12  
2.1.12  /usr/local/pkg/IGVviewer/2.1.12  ○  ○  ○  ○ 2012/05/23 18:26  
InterProScan 4.8  /usr/local/pkg/InterProScan/4.8  ○  ○  ○  ○ 2012/04/25 16:33  
/usr/local/pkg/InterProScan/current 2012/04/25 16:33  
MACS 2.1.1 /usr/local/bin  ○  ○  ○  ○ 2017/06/06 14:31  
1.4.2  /usr/local/pkg/MACS/1.4.2  ○  ○  ○  ○ 2012/05/18 16:02  
/usr/local/pkg/MACS/current 2012/05/18 16:03  
/usr/local/bin 2012/05/18 16:02  
MAFFT 7.310 /usr/local/pkg/mafft/7.310 2017/06/12 15:53  
/usr/local/pkg/mafft/current 2017/06/12 15:53  
/usr/local/bin 2017/06/12 15:53  
7.305 /usr/local/pkg/mafft/7.305 2016/10/31 16:03  
7.273 /usr/local/pkg/mafft/7.273 2016/03/23 17:40  
7.245 /usr/local/pkg/mafft/7.245 2015/08/24 17:40  
7.215 /usr/local/pkg/mafft/7.215 2015/02/20 16:12  
7.158 /usr/local/pkg/mafft/7.158 2014/07/10 14:42  
6.864 /usr/local/pkg/mafft/6.864 2012/04/06 15:37  
MEME 4.12.0 /usr/local/pkg/meme/4.12.0 2017/10/20 13:48  
4.11.4 /usr/local/pkg/meme/4.11.4 2017/06/12 17:04  
/usr/local/pkg/meme/current 2017/06/12 17:04  
/usr/local/bin 2017/06/12 17:04  
4.11.2 /usr/local/pkg/meme/4.11.2  ○  ○ ○   ○ 2016/10/31 16:16  
4.11.1 /usr/local/pkg/meme/4.11.1 2016/03/24 15:30  
4.8.1 /usr/local/pkg/meme/4.8.1 2012/02/23 17:22  
Mothur 1.36.1 /usr/local/pkg/Mothur/1.36.1 2015/11/02 17:06  
/usr/local/pkg/Mothur/current 2015/11/02 17:06  
/usr/local/bin 2015/11/02 17:06  
1.36.0 /usr/local/pkg/Mothur/1.36.0 2015/08/24 17:40  
1.34.3 /usr/local/pkg/Mothur/1.34.3 2015/02/20 16:12  
1.33.3 /usr/local/pkg/Mothur/1.33.3  ○ 2014/05/22 13:13  
mrbayes5d 3.1.2  /usr/local/pkg/mrbayes5d/3.1.2 2015/01/21 13:45  
/usr/local/pkg/mrbayes5d/current 2015/01/21 13:45  
NCBI-BLAST+ 2.7.0+ /usr/local/pkg/ncbi_blast+/ncbi-blast-2.7.0+ 2017/10/20 14:25  
2.6.0+ /usr/local/pkg/ncbi_blast+/ncbi-blast-2.6.0+ 2016/12/08 08:15  
/usr/local/pkg/ncbi_blast+/current 2016/12/08 08:15  
2.3.0+ /usr/local/pkg/ncbi_blast+/ncbi-blast-2.3.0+ 2016/03/18 13:39  
2.2.31+ /usr/local/pkg/ncbi_blast+/ncbi-blast-2.2.31+ 2015/08/24 17:40  
2.2.30+ /usr/local/pkg/ncbi_blast+/ncbi-blast-2.2.30+ 2015/02/20 16:12  
2.2.29+  /usr/local/pkg/ncbi_blast+/ncbi-blast-2.2.29+ 2014/06/23 10:01  
2.2.25+ /usr/local/pkg/ncbi_blast+/ncbi-blast-2.2.25+ 2012/02/08 16:50  
NCBI-CXX-toolkit 18.0.0 /usr/local/pkg/ncbi_cxx_toolkit/18.0.0  ○ 2017/02/21 08:50  
/usr/local/pkg/ncbi_cxx_toolkit/current 2017/02/21 08:50  
12.0.0 /usr/local/pkg/ncbi_cxx_toolkit/12.0.0 2014/07/10 14:45  
9.0.0 /usr/local/pkg/ncbi_cxx_toolkit/9.0.0 2014/02/17 13:20 ph2のみ
7.0.0 /usr/local/pkg/ncbi_cxx_toolkit/7.0.0 2012/02/07 10:06 ph1のみ
NCBI-toolkit 2.2.26  /usr/local/pkg/ncbi_toolkit/2.2.26  ○  ○  ○  ○ 2012/12/13 13:48  
/usr/local/pkg/ncbi_toolkit/current 2012/12/13 14:09  
/usr/local/bin 2012/12/13 13:48  
2.2.25  /usr/local/pkg/ncbi_toolkit/2.2.25  ○  ○ 2012/02/06 15:38  
Oases 0.2.08 /usr/local/pkg/Oases/0.2.08 2015/02/20 16:12  
/usr/local/pkg/Oases/current 2015/02/20 16:12  
/usr/local/bin 2015/02/20 16:12  
0.2.06 /usr/local/pkg/Oases/0.2.06  ○  ○  ○  ○ 2012/05/18 18:36  
PHYLIP 3.696 /usr/local/pkg/phylip/3.696 2015/02/20 16:12  
/usr/local/pkg/phylip/current 2015/02/20 16:12  
3.695 /usr/local/pkg/phylip/3.695  ○  ○  ○  ○ 2014/02/14 09:01 ph2のみ
3.69 /usr/local/pkg/phylip/3.69 2012/02/07 18:57 ph1のみ
Picard 1.119 /usr/local/pkg/Picard/1.119 2015/02/20 16:12  
/usr/local/pkg/Picard/current 2015/02/20 16:12  
1.68  /usr/local/pkg/Picard/1.68  ○  ○  ○  ○ 2012/05/18 18:45  
Pindel 0.2.5b9 /usr/local/pkg/Pindel/0.2.5b9  ○  ○  ○ 2017/06/20 17:10
0.2.5a3 /usr/local/bin 2014/02/15 10:40 ph2のみ
0.2.4d /usr/local/bin 2012/05/23 17:15 ph1のみ
RAxML 8.2.10 /usr/local/pkg/RAxML/8.2.10 2017/06/20 15:56  
/usr/local/pkg/RAxML/current 2017/06/20 15:56  
/usr/local/bin 2017/06/20 15:56  
8.2.7 /usr/local/pkg/RAxML/8.2.7 2016/03/18 16:25  
8.2.4 /usr/local/pkg/RAxML/8.2.4 2015/11/02 17:06  
8.2.0 /usr/local/pkg/RAxML/8.2.0 2015/08/24 17:40  
8.1.17 /usr/local/pkg/RAxML/8.1.17 2015/02/20 16:12  
7.2.8 /usr/local/pkg/RAxML/7.2.8-ALPHA  ○  ○  ○  ○ 2012/04/06 15:29  
RSEM 1.3.0 /usr/local/pkg/rsem/1.3.0 2016/10/31 14:11  
/usr/local/pkg/rsem/current 2016/10/31 14:11  
1.2.22 /usr/local/pkg/rsem/1.2.22 2015/11/02 17:06  
1.2.21 /usr/local/pkg/rsem/1.2.21 2015/08/24 17:40  
1.2.20 /usr/local/pkg/rsem/1.2.20 2015/04/14 11:57  
1.2.12 /usr/local/pkg/rsem/1.2.12 2015/04/14 11:55  
1.2.9 /usr/local/pkg/rsem/1.2.9 2015/02/20 16:12  
1.2.8 /usr/local/pkg/rsem/1.2.8 2013/12/04 11:24  
SAMtools 1.6 /usr/local/pkg/samtools/1.6 2017/10/18 15:45  
1.4.1 /usr/local/pkg/samtools/1.4.1 2017/06/20 11:15  
/usr/local/pkg/samtools/current 2017/06/20 11:15  
/usr/local/bin 2017/06/20 11:15  
1.3.1 /usr/local/pkg/samtools/1.3.1 2016/10/31 16:20  
1.3 /usr/local/pkg/samtools/1.3 2016/03/18 16:49  
1.2 /usr/local/pkg/samtools/1.2 2015/02/20 16:12  
0.1.19 /usr/local/pkg/samtools/0.1.19  ○  ○  ○  ○ 2014/07/10 15:31  
0.1.18 /usr/local/pkg/samtools/0.1.18 2012/02/03 19:13  
0.1.16  /usr/local/pkg/samtools/0.1.16  ○  ○  ○ 2012/02/03 19:13  
SOAP  2.21  /usr/local/pkg/SOAP/2.21  ○  ○  ○  ○ 2012/02/07 11:20  
SOAP3  r146  /usr/local/pkg/SOAP3/r146  -   -   -   ○ 2012/06/12 16:07  
/usr/local/pkg/SOAP3/current - - - 2012/06/12 16:35  
SOAP3-dp 5.5 /usr/local/pkg/SOAP3-dp/5.5  -   -   -   ○ 2014/02/27 15:11 ph2のみ
/usr/local/pkg/SOAP3-dp/current - - - 2014/02/27 15:13 ph2のみ
1.4-cuda4.1 /usr/local/pkg/SOAP3-dp/1.4-cuda4.1 - - - 2012/05/15 00:30 ph1のみ
/usr/local/pkg/SOAP3-dp/current - - - 2012/06/12 16:34 ph1のみ
SOAPdenovo  2.04-r240 /usr/local/pkg/SOAPdenovo/2.04-r240  ○  ○  ○  ○ 2014/07/10 14:14  
1.0.5 /usr/local/pkg/SOAPdenovo/1.05 2012/02/07 11:27  
/usr/local/bin 2012/02/07 11:27  
sprai 0.9.9.23 /usr/local/pkg/sprai/0.9.9.23 2017/06/20 15:31  
/usr/local/pkg/sprai/current 2017/06/20 15:31  
0.9.9.10  /usr/local/pkg/sprai/0.9.9.10 2015/12/24 11:59  
SRA-Tools 2.8.2 /usr/local/pkg/sra-tools/2.8.2 2017/06/20 11:47  
/usr/local/pkg/sra-tools/current 2017/06/20 11:47  
/usr/local/bin 2017/06/20 11:47  
2.8.0 /usr/local/pkg/sra-tools/2.8.0 2016/10/31 16:26  
2.5.7 /usr/local/pkg/sra-tools/2.5.7 2016/03/18 14:41  
2.5.4 /usr/local/pkg/sra-tools/2.5.4 2015/11/02 17:06  
2.5.2 /usr/local/pkg/sra-tools/2.5.2 2015/08/24 17:40  
2.4.4 /usr/local/pkg/sra-tools/2.4.4 2015/02/20 16:12  
2.2.2a /usr/local/pkg/sra-tools/2.2.2a  ○  ○  ○  ○ 2013/01/16 10:52  
SSAHA2 2.5.5 /usr/local/bin 2012/02/03 17:38  
STAR 2.5.3a /usr/local/pkg/STAR/2.5.3a 2017/10/20 10:39  
2.5.2b /usr/local/pkg/STAR/2.5.2b 2016/10/31 14:21   
/usr/local/pkg/STAR/current 2016/10/31 14:21  
2.5 /usr/local/pkg/STAR/2.5 2016/04/21 11:31  
TMAP 3.4.1 /usr/local/pkg/TMAP/3.4.1 2015/05/25 13:23  
/usr/local/pkg/TMAP/current 2015/05/25 13:23  
TopHat 1.4.0 /usr/local/pkg/tophat/1.4.0  ○  ○  ○  ○ 2014/02/13 17:35  
/usr/local/pkg/tophat/current 2014/02/13 17:35  
/usr/local/bin 2014/02/09 11:28  
1.0.11 /usr/local/pkg/tophat/1.0.11 2012/02/09 11:40  
TopHat2 2.1.1 /usr/local/pkg/tophat2/2.1.1 2016/03/18 15:04  
/usr/local/pkg/tophat2/current 2016/03/18 15:04  
2.1.0 /usr/local/pkg/tophat2/2.1.0 2015/08/24 17:40  
2.0.13 /usr/local/pkg/tophat2/2.0.13 2015/02/20 16:12  
2.0.11 /usr/local/pkg/tophat2/2.0.11 2014/07/01 09:26  
2.0.5 /usr/local/pkg/tophat2/2.0.5 2012/10/18 10:53  
2.0.4  /usr/local/pkg/tophat2/2.0.4  ○  ○  ○ 2012/07/09 11:06  
Trinity    2.5.0 /usr/local/pkg/Trinity/2.5.0  ○  ○  ○  ○ 2017/10/20 10:07  
2.4.0 /usr/local/pkg/Trinity/2.4.0  ○  ○  ○  ○ 2017/06/20 13:35  
/usr/local/pkg/Trinity/current 2017/06/20 13:35  
2.1.1 /usr/local/pkg/Trinity/2.1.1 2015/11/02 17:06  
2.0.6 /usr/local/pkg/Trinity/2.0.6 2015/08/24 17:40  
2.0.4 /usr/local/pkg/Trinity/2.0.4 2015/02/20 16:12  
r20140413p1 /usr/local/pkg/Trinity/r20140413p1 2014/07/11 10:29  
r2013-08-14 /usr/local/pkg/Trinity/r2013-08-14 2013/12/02 19:02  
r2013-02-25 /usr/local/pkg/Trinity/r2013-02-25  ○  ○  ○  ○ 2013/08/21 11:21  
r2012-04-27 /usr/local/pkg/Trinity/r2012-04-27  ○  ○  ○  ○ 2012/07/23 13:25  
Velvet 1.2.10 /usr/local/pkg/velvet/velvet_1.2.10 2014/07/10 15:55  
/usr/local/pkg/velvet/current 2014/07/10 15:55  
/usr/local/bin 2014/07/10 15:55  
1.2.03 /usr/local/pkg/velvet/velvet_1.2.03 2012/05/15 20:51  
/usr/local/pkg/velvet/velvet_1.2.03_intel 2012/05/15 18:41 ph1のみ
1.0.02 /usr/local/pkg/velvet/velvet_1.0.02 2012/02/07 14:16  
wgs 8.3rc2 /usr/local/pkg/wgs/8.3rc2 2015/12/24 11:57  
/usr/local/pkg/wgs/current 2015/12/24 11:57  

ライブラリ


シンボリックリンク  標準   T (thin) F (fat) M (medium) G (gpu):インストールノード

 名称バージョンPATHT FM G インストール日時備考
acml-gfortran 5.1.0 /usr/local/pkg/acml-gfortran/5.1.0  ○  ○  ○  ○ 2012/02/01 15:29  
/usr/local/pkg/acml-gfortran/current 2012/03/28 15:58  
acml-ifort 5.0.0 /usr/local/pkg/acml-ifort/5.0.0  ○  ○  ○  ○ 2012/02/01 09:52  
/usr/local/pkg/acml-ifort/current 2012/03/28 15:59  
acml-pgi 5.0.0 /usr/local/pkg/acml-pgi/5.0.0  ○  ○  ○  ○ 2012/02/01 09:36  
/usr/local/pkg/acml-pgi/current 2012/03/28 15:59  
gmp 5.1.2 /usr/local/pkg/gmp/5.1.2  ○  ○  ○  ○ 2013/07/19 13:55  
/usr/local/pkg/gmp/current 2014/02/05 14:41 ph2 current
/usr/local/lib 2013/07/19 13:55  
5.0.2 /usr/local/pkg/gmp/5.0.2  ○  ○  ○  ○ 2012/01/25 14:35 ph1のみ
/usr/local/pkg/gmp/current 2012/03/28 16:01 ph1 current
gsl 1.15 /usr/local/pkg/gsl/1.15  ○  ○  ○  ○ 2012/07/02 14:40  
/usr/local/pkg/gsl/current 2012/07/02 18:54  
/usr/local/bin 2012/07/02 18:54  
libtool 2.4.2 /usr/local/pkg/libtool/2.4.2  ○  ○  ○  ○ 2012/02/07 16:33  
/usr/local/pkg/libtool/current 2012/03/28 16:02  
/usr/local/bin 2012/02/07 16:33  
libxslt 1.1.26 /usr/local/pkg/libxslt/1.1.26  ○  ○  ○  ○ 2013/02/08 09:51  
/usr/local/pkg/libxslt/current 2012/03/28 16:02  
/usr/bin 2013/02/08 09:51  
mpc 1.0.1 /usr/local/pkg/mpc/1.0.1  ○  ○  ○  ○ 2013/07/19 14:18  
/usr/local/pkg/mpc/current 2014/02/07 15:32 ph2 current
/usr/local/lib 2013/07/19 14:18  
0.9 /usr/local/pkg/mpc/0.9  ○  ○  ○  ○ 2012/01/25 14:45 ph1のみ
/usr/local/pkg/mpc/current 2012/03/28 16:02 ph1 current 
mpfr 3.1.2 /usr/local/pkg/mpfr/3,1,2  ○  ○  ○  ○ 2013/07/19 14:02  
/usr/local/pkg/mpfr/current 2014/02/07 15:24 ph2 current
/usr/local/lib 2013/07/19 14:02  
3.1.0 /usr/local/pkg/mpfr/3.1.0  ○  ○  ○  ○ 2012/01/25 14:42 ph1のみ
/usr/local/pkg/mpfr/current 2012/03/28 16:02 ph1のみ
openmm 4.0 /usr/local/pkg/openmm/4.0  ○  ○  ○  ○ 2012/02/10 13:28  
/usr/local/pkg/openmm/current 2012/03/28 16:03  

openmpi

1.6.5_icc /usr/local/pkg/openmpi/1.6.5_icc  ○  ○  ○  ○ 2013/09/24 16:47  
/usr/local/pkg/openmpi/current 2013/11/11 01:58  
/usr/local/bin 2013/11/11 01:58  
/usr/local/pkg/openmpi/current_icc 2013/11/11 01:58  
1.6.5_gcc /usr/local/pkg/openmpi/1.6.5_gcc  ○  ○  ○  ○ 2013/09/24 16:49  
/usr/local/pkg/openmpi/current_gcc 2013/11/11 01:58  
1.6.5_pgcc /usr/local/pkg/openmpi/1.6.5_pgcc  ○  ○  ○  ○ 2013/09/24 16:56  
/usr/local/pkg/openmpi/current_pgcc 2013/11/11 01:58  
1.4.4  icc版 /usr/local/pkg/openmpi/1.4.4_icc  ○  ○  ○  ○ 2012/02/03 13:43  
1.4.4  gcc版 /usr/local/pkg/openmpi/1.4.4_gcc  ○  ○  ○  ○ 2012/02/03 13:23  
1.4.4  pgcc版 /usr/local/pkg/openmpi/1.4.4_pgcc  ○  ○  ○  ○ 2012/07/26 19:07  
zlib 1.2.6 /usr/local/pkg/zlib/1.2.6 2012/02/07 16:31  
/usr/local/pkg/zlib/current 2012/03/28 16:06  
/usr/local/lib 2012/02/07 16:31  
1.2.3 /usr/local/pkg/zlib/1.2.3  ○  ○  ○  ○ 2012/02/08 13:32  

一般(非OSS含む)


シンボリックリンク  標準   T (thin) F (fat) M (medium) G (gpu):インストールノード

 名称バージョン PATHT FM Gインストール日時備考
R 2.14.1 /usr/local/pkg/R/2.14.1_icc_mkl_shared  ○  ○  ○  ○ 2012/02/03 11:21  
/usr/local/pkg/R/current 2012/03/28 15:58  
/usr/local/bin 2012/02/03 11:21  
Intel Compiler 16.0.1 /opt/intel/xe_2016 2013/11/10 22:31 プログラミンング環境
14.0.0 /opt/intel/composer_xe_2013_sp1.0.080 2013/11/10 22:31  
PGI Accelerator 2016 /opt/pgi/linux86-64/current 2013/11/05 19:09 プログラミンング環境
2013 /opt/pgi/linux86-64/2013 2013/11/05 19:09  
gcc 5.3.0 /usr/local/pkg/gcc/5.3.0  ○  ○  ○  ○ 2016/04/04 14:53  
4.8.5   /usr/local/pkg/gcc/4.8.5 2016/05/25 15:32 プログラミンング環境
/usr/local/pkg/gcc/current 2016/05/25 15:32  
/usr/local/bin 2016/05/25 15:32   
4.8.1 /usr/local/pkg/gcc/4.8.1 2013/07/22 13:12
4.6.2 /usr/local/pkg/gcc/4.6.2  ○  ○  ○  ○ 2012/01/26 11:19 ph1のみ



java



jdk1.8.0_45 /usr/local/pkg/java/jdk1.8.0_45  ○  ○  ○  ○ 2015/04/11 02:26  
/usr/local/pkg/java/current  ○  ○  ○  ○ 2015/04/11 02:26  
/usr/local/pkg/java/current-1.8 2014/04/24 16:26  
jdk1.8.0_05 /usr/local/pkg/java/jdk1.8.0_05 2014/03/18 16:40  
jdk1.7.0_79 /usr/local/pkg/java/jdk1.7.0_79 2015/04/11 03:53  
/usr/local/pkg/java/current-1.7 2013/02/04 16:27  
jdk1.7.0_13 /usr/local/pkg/java/jdk1.7.0_13 2013/02/04 15:22  
jdk1.7.0_09 /usr/local/pkg/java/jdk1.7.0_09  ○  ○  ○  ○ 2012/10/22 10:32 ph1のみ
jdk1.7.0_05 /usr/local/pkg/java/jdk1.7.0_05  ○  ○  ○  ○ 2012/08/31 10:11 ph1のみ
jdk1.7.0_03 /usr/local/pkg/java/jdk1.7.0_03  ○  ○  ○  ○ 2012/02/23 18:18 ph1のみ
jdk1.7.0_02 /usr/local/pkg/java/jdk1.7.0_02  ○  ○  ○  ○ 2012/02/01 14:10 ph1のみ

jdk1.6.0_45

/usr/local/pkg/java/jdk1.6.0_45  ○  ○  ○  ○ 2013/03/27 08:53  
/usr/local/pkg/java/current-1.6 2013/02/04 16:27  
jdk1.6.0_39 /usr/local/pkg/java/jdk1.6.0_39 2013/02/04 15:22  
jdk1.6.0_37 /usr/local/pkg/java/jdk1.6.0_37  ○  ○  ○  ○ 2012/10/22 10:31 ph1のみ
jdk1.6.0_33 /usr/local/pkg/java/jdk1.6.0_33  ○ ○  ○  ○  2012/08/31 10:10 ph1のみ
jdk1.6.0_31 /usr/local/pkg/java/jdk1.6.0_31  ○  ○  ○  ○ 2012/02/23 18:07 ph1のみ
jdk1.6.0_30 /usr/local/pkg/java/jdk1.6.0_30  ○  ○  ○  ○ 2012/02/01 14:09 ph1のみ
jdk1.5.0_22 /usr/local/pkg/java/jdk1.5.0_22  ○  ○  ○  ○ 2012/02/01 14:09 ph1のみ
/usr/local/pkg/java/current-1.5 2012/08/29 11:57 ph1のみ
perl 5.22.1 /usr/local/pkg/perl/5.22.1  ○  ○  ○  ○ 2016/04/08 16:52  
/usr/local/pkg/perl/current 2016/04/08 16:52  
/usr/local/bin 2016/04/08 16:52  
5.14.2 /usr/local/pkg/perl/5.14.2 2012/02/03 11:36  
python 3.5.1 /usr/local/pkg/python/3.5.1  ○  ○  ○  ○ 2016/03/14 17:04  
/usr/local/pkg/python/current 2016/03/14 17:04  
/usr/local/bin 2016/03/14 17:04  
3.4.4 /usr/local/pkg/python/3.4.4 2016/03/14 10:50  
3.2.2  /usr/local/pkg/python/3.2.2 2012/02/01 17:04  
2.7.2 /usr/local/bin  ○  ○  ○  ○ 2012/02/01 16:51  
ruby 2.3.0 /usr/local/pkg/ruby/2.3.0  ○  ○  ○  ○ 2016/04/05 15:18  
/usr/local/pkg/ruby/current 2016/04/05 15:18  
/usr/local/bin 2016/04/05 15:18  
2.2.4 /usr/local/pkg/ruby/2.2.4 2015/12/24 13:48  
2.2.2 /usr/local/pkg/ruby/2.2.2 2015/04/22 14:40  
2.1.8 /usr/local/pkg/ruby/2.1.8 2015/12/24 13:18  
2.1.6 /usr/local/pkg/ruby/2.1.6 2015/04/22 13:32  
2.1.4 /usr/local/pkg/ruby/2.1.4 2014/12/02 15:00  
1.9.3-p550 /usr/local/pkg/ruby/1.9.3-p550 2014/12/02 15:00  
1.9.3-p194 /usr/local/pkg/ruby/1.9.3-p194 2012/06/07 11:07  
1.9.3-p125 /usr/local/pkg/ruby/1.9.3-p125  ○  ○  ○  ○ 2012/02/17 10:50  
1.9.3-p0 /usr/local/pkg/ruby/1.9.3-p0  ○  ○  ○  ○ 2012/02/01 15:05 ph1のみ
1.8.7-p352 /usr/local/pkg/ruby/1.8.7-p352  ○  ○  ○  ○ 2012/02/01 14:28 ph1のみ
pdftk 2.02 /usr/local/pkg/pdftk/2.02 2015/03/05 09:59  
/usr/local/pkg/pdftk/current 2015/03/05 09:59  
CUDAドライバ 8000 - - - -    
CUDAツールキット 8.0,V8.0.44 /usr/local/cuda - - - 2017/01/30 14:08  
7.5,V7.5.17 /usr/local/cuda-7.5 - - - 2016/04/19 11:30  
5.5, V5.5.0 /usr/local/cuda-5.5 - - - 2014/01/14 13:34 ph2のみ
4.1, V0.2.1221 /usr/local/cuda-4.1 - - - 2012/06/07 14:51 ph1のみ