For the NGS analysis pipeline, the tool called Portablepipeline has been developed by Professor Kazutoshi Yoshitake of the Laboratory of Aquatic Molecular Biology and Biotechnology, Aquatic Bioscience, Graduate school of Agricultural and Life Sciences, The Univresity of Tokyo.
「PortablePipeline is software that allows Windows and Mac users to perform NGS analysis in a GUI on a local or remote server or supercomputer.」(Referenced from the Laboratory of Aquatic Molecular Biology and Biotechnology)