| Supercomputer users in authors list(Japanese) | Supercomputer users in authors list | Title | Journal, Volume, Number, Pages | PMID | DOI |
1 | 安井 康夫 | Yasuo Yasui | Chromosome-scale genome assembly of a Japanese chili pepper landrace, Capsicum annuum 'Takanotsume'. | DNA Res. 2023 Feb 01; 30(1): dsac052. | 36566389 | doi: 10.1093/dnares/dsac052 |
2 | 清水 元樹 | Motoki Shimizu | Isolation of Pikps, an allele of Pik, from the aus rice cultivar Shoni. | Genes Genet Syst. 2023 Feb 22; 97(5): 229-235. | 36624071 | doi: 10.1266/ggs.22-00002 |
3 | 濱田 太立, 奥野 友介 | Motoharu Hamada, Yusuke Okuno | Germline and somatic RUNX1 variants in a pediatric bone marrow failure cohort. | Am J Hematol. 2023 May; 98(5): E102-E105. | 36740830 | doi: 10.1002/ajh.26874 |
4 | 谷澤 靖洋 | YasuhiroTanizawa | Genome Sequence and Analysis of Nicotiana benthamiana, the Model Plant for Interactions between Organisms. | Plant Cell Physiol. 2023 Mar 01; 64(2): 248-257. | 36755428 | doi: 10.1093/pcp/pcac168 |
5 | 村上 正志 | Masashi Murakami | Effect of light conditions on trophic level and gene expression of partially mycoheterotrophic orchid, Cymbidium goeringii. | Plant Signal Behav. 2023 Dec 31; 18(1): 2180159. | 36800921 | doi: 10.1080/15592324.2023.2180159 |
6 | 奥野 友介 | Yusuke Okuno | Juvenile Hemochromatosis With Non-transfused Hemolytic Anemia Caused by a De Novo PIEZO1 Gene Mutation. | J Pediatr Hematol Oncol. 2023 May 01; 45(4): e510-e513. | 36898020 | doi: 10.1097/MPH.0000000000002639 |
7 | 石崎 公庸 | Kimitsune Ishizaki | Abscisic acid-mediated sugar responses are essential for vegetative desiccation tolerance in the liverwort Marchantia polymorpha. | Physiol Plant. 2023 Mar; 175(2): e13898. | 36974502 | doi: 10.1111/ppl.13898 |
8 | 谷澤 靖洋 | Yasuhiro Tanizawa | A leaf-emanated signal orchestrates grain size and number in response to maternal resources. | Plant J. 2023 Jul; 115(1): 175-189. | 36994645 | doi: 10.1111/tpj.16219 |
9 | 中川 草 | So Nakagawa | Dynamic Evolution of Retroviral Envelope Genes in Egg-Laying Mammalian Genomes. | Mol Biol Evol. 2023 May 02; 40(5): msad090. | 37062963 | doi: 10.1093/molbev/msad090 |
10 | 田中 龍聖 | Ryusei Tanaka | Differentially Expressed Genes Associated with Body Size Changes and Transposable Element Insertions between Caenorhabditis elegans and Its Sister Species, Caenorhabditis inopinata. | Genome Biol Evol. 2023 Apr 06; 15(4): evad063. | 37071793 | doi: 10.1093/gbe/evad063 |
11 | 松本 有樹修, 市原 知哉 | Akinobu Matsumoto, Kazuya Ichihara | RPL3L-containing ribosomes determine translation elongation dynamics required for cardiac function. | Nat Commun. 2023 Apr 20; 14(1): 2131. | 37080962 | doi: 10.1038/s41467-023-37838-6 |
12 | 松本 有樹修, 市原 知哉 | Akinobu Matsumoto, Kazuya Ichihara | The ASC-1 complex promotes translation initiation by scanning ribosomes. | EMBO J. 2023 Jun 15; 42(12): e112869. | 37092320 | doi: 10.15252/embj.2022112869 |
13 | 今村 比呂志 | Hiroshi Imamura | Getting Smaller by Denaturation: Acid-Induced Compaction of Antibodies. | J Phys Chem Lett. 2023 Apr 27; 14(16): 3898-3906. | 37093025 | doi: 10.1021/acs.jpclett.3c00258 |
14 | 小林 寿美, 谷澤 靖洋, 遠野 雅徳 | Hisami Kobayashi, Yasuhiro Tanizawa, Masanori Tohno | Clostridium folliculivorans sp. nov., isolated from soil samples of an organic paddy in Japan. | Int J Syst Evol Microbiol. 2023 Apr; 73(4): | 37103467 | doi: 10.1099/ijsem.0.005876 |
15 | 岡田 萌子 | Moeko Okada | Phenotypic effects of Am genomes in nascent synthetic hexaploids derived from interspecific crosses between durum and wild einkorn wheat. | PLoS One. 2023; 18(4): e0284408. | 37104480 | doi: 10.1371/journal.pone.0284408 |
16 | 川崎 純菜 | Junna Kawasaki | Feline Foamy Virus Transmission in Tsushima Leopard Cats (Prionailurus bengalensis euptilurus) on Tsushima Island, Japan. | Viruses. 2023 Mar 24; 15(4): 835. | 37112816 | doi: 10.3390/v15040835 |
17 | 押木 守 | Mamoru Oshiki | Oxygen tolerance and detoxification mechanisms of highly enriched planktonic anaerobic ammonium-oxidizing (anammox) bacteria. | ISME Commun. 2023 May 03; 3(1): 45. | 37137967 | doi: 10.1038/s43705-023-00251-7 |
18 | 石原 慎矢 | Ishihara Shinya | Detection of long terminal repeat loci derived from endogenous retrovirus in junglefowl using whole-genome sequencing. | Sci Rep. 2023 May 06; 13(1): 7380. | 37149699 | doi: 10.1038/s41598-023-34520-1 |
19 | 吉田 真明 | Masaaki Yoshida | Deep ocean water alters the cholesterol and mineral metabolism of squid Todarodes pacificus and suppresses its weight loss. | Sci Rep. 2023 May 10; 13(1): 7591. | 37164992 | doi: 10.1038/s41598-023-34443-x |
20 | 岩上 哲史 | Satoshi Iwakami | Transcriptionally linked simultaneous overexpression of P450 genes for broad-spectrum herbicide resistance. | Plant Physiol. 2023 Aug 03; 192(4): 3017-3029. | 37195199 | doi: 10.1093/plphys/kiad286 |
21 | 飯塚 康介 | Kosuke Iizuka | Singularity response reveals entrainment properties in mammalian circadian clock. | Nat Commun. 2023 May 17; 14(1): 2819. | 37198169 | doi: 10.1038/s41467-023-38392-x |
22 | 弓本 佳苗 | Kanae Yumimoto | Molecular evolution of Keap1 was essential for adaptation of vertebrates to terrestrial life. | Sci Adv. 2023 May 19; 9(20): eadg2379. | 37205751 | doi: 10.1126/sciadv.adg2379 |
23 | 細木 拓也 | Takuya Hosoki | Plate reduction in southern Japanese freshwater populations of threespine stickleback (Gasterosteus aculeatus). | Ecol Evol. 2023 May; 13(5): e10077. | 37206690 | doi: 10.1002/ece3.10077 |
24 | 加藤 有己 | Yuki Kato | RNA editing of AZIN1 coding sites is catalyzed by ADAR1 p150 after splicing. | J Biol Chem. 2023 Jul; 299(7): 104840. | 37209819 | doi: 10.1016/j.jbc.2023.104840 |
25 | 奥野 友介 | Yusuke Okuno | KLK11 ichthyosis: large truncal hyperkeratotic pigmented plaques underscore a distinct autosomal dominant disorder of cornification. | Br J Dermatol. 2023 Jul 07; 189(1): 134-136. | 36689511 | doi: 10.1093/bjd/ljad082 |
26 | 原 雄一郎, 工樂 樹洋 | Yuichiro Hara, Shigehiro Kuraku | The impact of local genomic properties on the evolutionary fate of genes. | Elife. 2023 May 24; 12: e82290. | 37223962 | doi: 10.7554/eLife.82290 |
27 | 竹崎 直子 | Naoko Takezaki | Effect of Different Types of Sequence Data on Palaeognath Phylogeny. | Genome Biol Evol. 2023 Jun 01; 15(6): evad092. | 37227001 | doi: 10.1093/gbe/evad092 |
28 | 佐藤 健吾 | Kengo Sato | Recent trends in RNA informatics: a review of machine learning and deep learning for RNA secondary structure prediction and RNA drug discovery. | Brief Bioinform. 2023 Jul 20; 24(4): bbad186. | 37232359 | doi: 10.1093/bib/bbad186 |
29 | Bui Hoang Phuc | Bui Hoang Phuc | Comparative genomics of two Vietnamese Helicobacter pylori strains, CHC155 from a non-cardia gastric cancer patient and VN1291 from a duodenal ulcer patient. | Sci Rep. 2023 May 31; 13(1): 8869. | 37258611 | doi: 10.1038/s41598-023-35527-4 |
30 | Kartika Afrida Fauzia | Kartika Afrida Fauzia | Genetic determinants of Biofilm formation of Helicobacter pylori using whole-genome sequencing. | BMC Microbiol. 2023 Jun 01; 23(1): 159. | 37264297 | doi: 10.1186/s12866-023-02889-8 |
31 | 角谷 徹仁 | Tetsuji Kakutani | Arms race between anti-silencing and RdDM in noncoding regions of transposable elements. | EMBO Rep. 2023 Aug 03; 24(8): e56678. | 37272687 | doi: 10.15252/embr.202256678 |
32 | 嶋田 誠 | Makoto Shimada | Splicing Modulators Are Involved in Human Polyglutamine Diversification via Protein Complexes Shuttling between Nucleus and Cytoplasm. | Int J Mol Sci. 2023 Jun 01; 24(11): 9622. | 37298574 | doi: 10.3390/ijms24119622 |
33 | 前野 慎太朗, 遠藤 明仁 | Shintaro Maeno, Akihito Endo | Spore-forming properties and enhanced oxygen tolerance of butyrate-producing Anaerostipes spp. | Anaerobe. 2023 Aug; 82: 102752. | 37301503 | doi: 10.1016/j.anaerobe.2023.102752 |
34 | 関根 光太郎, 小野口 真広 | Kotaro Sekine, Masahiro Onoguchi | Transposons contribute to the acquisition of cell type-specific cis-elements in the brain. | Commun Biol. 2023 Jun 10; 6(1): 631. | 37301950 | doi: 10.1038/s42003-023-04989-7 |
35 | 奥野 友介 | Yusuke Okuno | Hematological abnormalities in Jacobsen syndrome: cytopenia of varying severities and morphological abnormalities in peripheral blood and bone marrow. | Haematologica. 2023 Dec 01; 108(12): 3438-3443. | 37317839 | doi: 10.3324/haematol.2022.282513 |
36 | 鈴木 郁夫 | Ikuo Suzuki | Co-culture system of human skin equivalents with mouse neural spheroids. | J Biosci Bioeng. 2023 Sep; 136(3): 239-245. | 37344278 | doi: 10.1016/j.jbiosc.2023.05.008 |
37 | 西山 智明 | Tomoaki NISHIYAMA | Extensive Copy Number Variation Explains Genome Size Variation in the Unicellular Zygnematophycean Alga, Closterium peracerosum-strigosum-littorale Complex. | Genome Biol Evol. 2023 Aug 01; 15(8): evad115. | 37348049 | doi: 10.1093/gbe/evad115 |
38 | 中村 恭菜 | Yasuna Nakamura | Alpha 7 nicotinic acetylcholine receptors signaling boosts cell-cell interactions in macrophages effecting anti-inflammatory and organ protection. | Commun Biol. 2023 Jun 23; 6(1): 666. | 37353597 | doi: 10.1038/s42003-023-05051-2 |
39 | 三宅 浩太郎, 加藤 有己 | Kotaro Miyake, Yuki Kato | A cancer-associated METTL14 mutation induces aberrant m6A modification, affecting tumor growth. | Cell Rep. 2023 Jul 25; 42(7): 112688. | 37355987 | doi: 10.1016/j.celrep.2023.112688 |
40 | 内田 大賀, 新里 宙也 | Taiga Uchida, Chuya Shinzato | Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma. | DNA Res. 2023 Aug 01; 30(4): dsad014. | 37358253 | doi: 10.1093/dnares/dsad014 |
41 | 水口 洋平, 豊田 敦 | Yohei Minakuchi, Atsushi Toyoda | Expanded male sex-determining region conserved during the evolution of homothallism in the green alga Volvox. | iScience. 2023 Jun 16; 26(6): 106893. | 37720107 | doi: 10.1016/j.isci.2023.106893 |
42 | 川久保 修佑 | Shusuke Kawakubo | Two mutually exclusive evolutionary scenarios for allexiviruses that overcome host RNA silencing and autophagy by regulating viral CRP expression. | PLoS Pathog. 2023 Jun; 19(6): e1011457. | 37379324 | doi: 10.1371/journal.ppat.1011457 |
43 | 安井 康夫 | Yasuo Yasui | Development and chromosomal characterization of interspecific hybrids between common buckwheat (Fagopyrum esculentum) and a related perennial species (F. cymosum). | Breed Sci. 2023 Apr; 73(2): 230-236. | 37404347 | doi: 10.1270/jsbbs.22063 |
44 | Bui Hoang Phuc | Bui Hoang Phuc | Corrigendum: 'Genome-wide association study of gastric cancer- and duodenal ulcer-derived Helicobacter pylori strains reveals discriminatory genetic variations and novel oncoprotein candidates'. | Microb Genom. 2023 Jul; 9(7): mgen001062. | 37410636 | doi: 10.1099/mgen.0.001062 |
45 | 岡 香織 | Kaori Oka | Cellular senescence induction leads to progressive cell death via the INK4a-RB pathway in naked mole-rats. | EMBO J. 2023 Aug 15; 42(16): e111133. | 37431790 | doi: 10.15252/embj.2022111133 |
46 | 足助 聡一郎 | Soichiro Asuke | Loss of PWT7, Located on a Supernumerary Chromosome, Is Associated with Parasitic Specialization of Pyricularia oryzae on Wheat. | Mol Plant Microbe Interact. 2023 Nov; 36(11): 716-725. | 37432132 | doi: 10.1094/MPMI-06-23-0078-R |
47 | 岡田 萌子 | Moeko Okada | A low-coverage 3' RNA-seq to detect homeolog expression in polyploid wheat. | NAR Genom Bioinform. 2023 Sep; 5(3): lqad067. | 37448590 | doi: 10.1093/nargab/lqad067 |
48 | 松波 雅俊 | Masatoshi Matsunami | Demographic history of Ryukyu islanders at the southern part of the Japanese Archipelago inferred from whole-genome resequencing data. | J Hum Genet. 2023 Nov; 68(11): 759-767. | 37468573 | doi: 10.1038/s10038-023-01180-y |
49 | 大野 翔 | Sho Ohno | BpCYP76AD15 is involved in betaxanthin biosynthesis in bougainvillea callus. | Planta. 2023 Jul 20; 258(2): 47. | 37474871 | doi: 10.1007/s00425-023-04202-3 |
50 | 西原 秀典 | Hidenori Nishihara | Kangaroo endogenous retrovirus (KERV) forms megasatellite DNA with a simple repetition pattern in which the provirus structure is retained. | Virology. 2023 Sep; 586: 56-66. | 37487326 | doi: 10.1016/j.virol.2023.07.005 |
51 | 中村 保一 | Yasukazu Nakamura | Large-scale epidemiological study on feline autosomal dominant polycystic kidney disease and identification of novel PKD1 gene variants. | J Feline Med Surg. 2023 Jul; 25(7): 1098612X231185393. | 37489504 | doi: 10.1177/1098612X231185393 |
52 | Kartika Afrida Fauzia | Kartika Afrida Fauzia | A single-nucleotide polymorphism in Helicobacter pylori promotes gastric cancer development. | Cell Host Microbe. 2023 Aug 09; 31(8): 1345-1358.e6. | 37949252 | doi: 10.1016/j.chom.2023.06.016 |
53 | 原 雄一郎, 川路 英哉 | Kawaji Hideya, Yuichiro Hara | PLA2G2E-mediated lipid metabolism triggers brain-autonomous neural repair after ischemic stroke. | Neuron. 2023 Oct 04; 111(19): 2995-3010.e9. | 37797578 | doi: 10.1016/j.neuron.2023.06.024 |
54 | 草間 和哉 | Kazuya Kusama | Global analyses and potential effects of extracellular vesicles on the establishment of conceptus implantation during the peri-implantation period. | J Reprod Dev. 2023 Oct 20; 69(5): 246-253. | 37495510 | doi: 10.1262/jrd.2023-044 |
55 | 佐藤 大気 | Daiki Sato | Genomic adaptive potential to cold environments in the invasive red swamp crayfish. | iScience. 2023 Aug 18; 26(8): 107267. | 37520695 | doi: 10.1016/j.isci.2023.107267 |
56 | 安本 周平 | Shuhei Yasumoto | Foreign DNA detection in genome-edited potatoes by high-throughput sequencing. | Sci Rep. 2023 Aug 09; 13(1): 12246. | 37558681 | doi: 10.1038/s41598-023-38897-x |
57 | Fawcett Jeffrey, 矢﨑 裕規, 竹内 直子, 大田 竜也, 安井 康夫 | Jeffrey Fawcett, Euki Yazaki, Naoko Takeuchi, Tatsuya Ota, Yasuo Yasui | Genome sequencing reveals the genetic architecture of heterostyly and domestication history of common buckwheat. | Nat Plants. 2023 Aug; 9(8): 1236-1251. | 37563460 | doi: 10.1038/s41477-023-01474-1 |
58 | 丹野 広貴 遠藤 明仁 | Hiroki Tanno, Akihito Endo | Faecalibacterium hominis Liu et al. 2023 is a later heterotypic synonym of Faecalibacterium duncaniae Sakamoto et al. 2022. | Int J Syst Evol Microbiol. 2023 Aug; 73(8): | 37566461 | doi: 10.1099/ijsem.0.005995 |
59 | イワサキ タケシ | Takeshi Iwasaki | Clinical significance of the expression of FOXP3 and TIGIT in Merkel cell carcinoma. | Sci Rep. 2023 Aug 12; 13(1): 13114. | 37573372 | doi: 10.1038/s41598-023-40050-7 |
60 | 工樂 樹洋 | Shigehiro Kuraku | Elasmobranch genome sequencing reveals evolutionary trends of vertebrate karyotype organization. | Genome Res. 2023 Sep; 33(9): 1527-1540. | 37591668 | doi: 10.1101/gr.276840.122 |
61 | 石井 悠, 丸山 真一朗 | Yuu Ishii, Shinichiro Maruyama | Environmental pH signals the release of monosaccharides from cell wall in coral symbiotic alga. | Elife. 2023 Aug 18; 12: e80628. | 37594170 | doi: 10.7554/eLife.80628 |
62 | 小林 安文, 安井 康夫, 藤田 泰成 | Yasufumi Kobayashi, Yasui Yasuo, Yasunari Fujita | Phosphate starvation response precedes abscisic acid response under progressive mild drought in plants. | Nat Commun. 2023 Aug 19; 14(1): 5047. | 37598175 | doi: 10.1038/s41467-023-40773-1 |
63 | 晝間 敬, 青木 誠志郎 | Hiruma Kei, Aoki Seishiro | A fungal sesquiterpene biosynthesis gene cluster critical for mutualist-pathogen transition in Colletotrichum tofieldiae. | Nat Commun. 2023 Sep 06; 14(1): 5288. | 37673872 | doi: 10.1038/s41467-023-40867-w |
64 | 越水 静 | Shizuka Koshimizu | Genome and transcriptome analyses reveal genes involved in the formation of fine ridges on petal epidermal cells in Hibiscus trionum. | DNA Res. 2023 Oct 01; 30(5): dsad019. | 37691489 | doi: 10.1093/dnares/dsad019 |
65 | 川久保 修佑 | Shusuke Kawakubo | Host-specific adaptation drove the coevolution of leek yellow stripe virus and Allium plants. | Microbiol Spectr. 2023 Sep 14; 11(5): e0234023. | 37706684 | doi: 10.1128/spectrum.02340-23 |
66 | 郷 康広 | Yasuhiro Go | Ghost introgression in ricefishes of the genus Adrianichthys in an ancient Wallacean lake. | J Evol Biol. 2023 Oct; 36(10): 1484-1493. | 37737547 | doi: 10.1111/jeb.14223 |
67 | 鄒 兆南, 沖 真弥 | Shinya Oki, Zhaonan Zou | Elucidating disease-associated mechanisms triggered by pollutants via the epigenetic landscape using large-scale ChIP-Seq data. | Epigenetics Chromatin. 2023 Sep 25; 16(1): 34. | 37743474 | doi: 10.1186/s13072-023-00510-w |
68 | 北川 瑶子 | Yohko Kitagawa | ZEB2 and MEIS1 independently contribute to hematopoiesis via early hematopoietic enhancer activation. | iScience. 2023 Oct 20; 26(10): 107893. | 37771659 | doi: 10.1016/j.isci.2023.107893 |
69 | 上野 将也, 小林 昌彦 | Masaya Ueno, Masahiko Kobayashi | Targeting cis-regulatory elements of FOXO family is a novel therapeutic strategy for induction of leukemia cell differentiation. | Cell Death Dis. 2023 Sep 29; 14(9): 642. | 37773170 | doi: 10.1038/s41419-023-06168-2 |
70 | 花田 耕介 | Kousuke Hanada | Expression profiles in knock-down transgenic plants of high and low diversified duplicate genes in Arabidopsis thaliana. | Genes Genet Syst. 2023 Nov 21; 98(5): 283-286. | 37779055 | doi: 10.1266/ggs.23-00019 |
71 | 若宮 健, 河田 雅圭 | Takeshi Wakamiya, Masakado Kawata | Genetic differentiation and local adaptation of the Japanese honeybee, Apis cerana japonica. | Ecol Evol. 2023 Oct; 13(10): e10573. | 37780082 | doi: 10.1002/ece3.10573 |
72 | 石崎 公庸 | Kimitsune Ishizaki | Phosphatidic acid phosphohydrolase modulates glycerolipid synthesis in Marchantia polymorpha and is crucial for growth under both nutrient-replete and -deficient conditions. | Planta. 2023 Oct 04; 258(5): 92. | 37792042 | doi: 10.1007/s00425-023-04247-4 |
73 | 下川 瑛太, 西浜 竜一 | Eita Shimokawa, Ryuichi Nishihama | Harnessing Deep Learning to Analyze Cryptic Morphological Variability of Marchantia polymorpha. | Plant Cell Physiol. 2023 Dec 06; 64(11): 1343-1355. | 37797211 | doi: 10.1093/pcp/pcad117 |
74 | 望月 孝子, 谷澤 靖洋, 中村 保一 | Takako Mochizuki, Yasuhiro Tanizawa, Yasukazu Nakamura | A practical assembly guideline for genomes with various levels of heterozygosity. | Brief Bioinform. 2023 Sep 22; 24(6): bbad337. | 37798248 | doi: 10.1093/bib/bbad337 |
75 | Fujihara Chiharu | Fujihara Chiharu | Omics-Based Mathematical Modeling Unveils Pathogenesis of Periodontitis in an Experimental Murine Model. | J Dent Res. 2023 Dec; 102(13): 1468-1477. | 37800405 | doi: 10.1177/00220345231196530 |
76 | 田原 沙絵子, 土屋 貴穂, 尾崎 遼 | Saeko Tahara, Takaho Tsuchiya, Haruka Ozaki | Transcription factor-binding k-mer analysis clarifies the cell type dependency of binding specificities and cis-regulatory SNPs in humans. | BMC Genomics. 2023 Oct 07; 24(1): 597. | 37805453 | doi: 10.1186/s12864-023-09692-9 |
77 | 鎌田 真由美 | Mayumi Kamada | Network-based prediction approach for cancer-specific driver missense mutations using a graph neural network. | BMC Bioinformatics. 2023 Oct 10; 24(1): 383. | 37817080 | doi: 10.1186/s12859-023-05507-6 |
78 | 中川 草, 片山 俊明 | So Nakagawa, Toshiaki Katayama | SARS-CoV-2 HaploGraph: visualization of SARS-CoV-2 haplotype spread in Japan. | Genes Genet Syst. 2023 Nov 21; 98(5): 221-237. | 37839865 | doi: 10.1266/ggs.23-00085 |
79 | 郷 康広 | Yasuhiro Go | The admixed brushtail possum genome reveals invasion history in New Zealand and novel imprinted genes. | Nat Commun. 2023 Oct 17; 14(1): 6364. | 37848431 | doi: 10.1038/s41467-023-41784-8 |
80 | 森 秀世, 大矢 恵代, 稲垣 宗一, 角谷 徹仁 | Shusei Mori, Satoyo Oya, Soichi Inagaki, Tetsuji Kakutani | Cotranscriptional demethylation induces global loss of H3K4me2 from active genes in Arabidopsis. | EMBO J. 2023 Dec 01; 42(23): e113798. | 37849386 | doi: 10.15252/embj.2023113798 |
81 | 新里 宙也 | Chuya Shinzato | Genes possibly related to symbiosis in early life stages of Acropora tenuis inoculated with Symbiodinium microadriaticum. | Commun Biol. 2023 Oct 18; 6(1): 1027. | 37853100 | doi: 10.1038/s42003-023-05350-8 |
82 | 粟津 暁紀 | Akinori Awazu | Possibilities of skin coat color-dependent risks and risk factors of squamous cell carcinoma and deafness of domestic cats inferred via RNA-seq data. | Genes Cells. 2023 Dec; 28(12): 893-905. | 37864512 | doi: 10.1111/gtc.13076 |
83 | 久米 慶太郎 | Keitaro Kume | Transcriptome data sets of free-living diplomonads, Trepomonas sp. and Hexamita sp. | Microbiol Resour Announc. 2023 Dec 14; 12(12): e0050623. | 37909738 | doi: 10.1128/MRA.00506-23 |
84 | 押木 守 | Mamoru Oshiki | Growth of the Nitrosomonas europaea cells in the biofilm and planktonic growth mode: Responses of extracellular polymeric substances production and transcriptome. | J Biosci Bioeng. 2023 Dec; 136(6): 430-437. | 37925312 | doi: 10.1016/j.jbiosc.2023.10.002 |
85 | 前原 秀紀, 土屋 貴穂 | Hideki Maehahra, Takaho Tsuchiya | DNA hypomethylation characterizes genes encoding tissue-dominant functional proteins in liver and skeletal muscle. | Sci Rep. 2023 Nov 05; 13(1): 19118. | 37926704 | doi: 10.1038/s41598-023-46393-5 |
86 | 布施 直之 | Naoyuki Fuse | Neural control of redox response and microbiota-triggered inflammation in Drosophila gut. | Front Immunol. 2023; 14: 1268611. | 37965334 | doi: 10.3389/fimmu.2023.1268611 |
87 | 國枝 武和 | Takekazu Kunieda | Considerations on the TardiVec-based analyses of tissue specificity and desiccation-induced supramolecular structure of target proteins. | Proc Natl Acad Sci U S A. 2023 Nov 28; 120(48): e2312563120. | 37983508 | doi: 10.1073/pnas.2312563120 |
88 | 石黒 健介 | Kensuke Ishiguro | Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth. | Cell. 2023 Dec 07; 186(25): 5517-5535.e24. | 37992713 | doi: 10.1016/j.cell.2023.10.026 |
89 | 福島 健児 | Kenji Fukushima | Subgenome dominance shapes novel gene evolution in the decaploid pitcher plant Nepenthes gracilis. | Nat Plants. 2023 Dec; 9(12): 2000-2015. | 37996655 | doi: 10.1038/s41477-023-01562-2 |
90 | 原田 亮 | Ryo Harada | Gleaning Euglenozoa-specific DNA polymerases in public single-cell transcriptome data. | Protist. 2023 Dec; 174(6): 125997. | 38039844 | doi: 10.1016/j.protis.2023.125997 |
91 | 加藤 柊也, 平瀬 祥太朗 | Shuya Kato, Shotaro Hirase | Genomic landscape of introgression from the ghost lineage in a gobiid fish uncovers the generality of forces shaping hybrid genomes. | Mol Ecol. 2023 Dec 04; null: | 38047388 | doi: 10.1111/mec.17216 |
92 | 矢原 耕史 | Koji Yahara | National genomic surveillance integrating standardized quantitative susceptibility testing clarifies antimicrobial resistance in Enterobacterales. | Nat Commun. 2023 Dec 05; 14(1): 8046. | 38278812 | doi: 10.1038/s41467-023-43516-4 |
93 | 河合 洋介 | Yosuke Kawai | Exploring the genetic diversity of the Japanese population: Insights from a large-scale whole genome sequencing analysis. | PLoS Genet. 2023 Dec; 19(12): e1010625. | 38060463 | doi: 10.1371/journal.pgen.1010625 |
94 | 市原 知哉 | Kazuya Ichihara | Mechanistic dissection of premature translation termination induced by acidic residues-enriched nascent peptide. | Cell Rep. 2023 Dec 26; 42(12): 113569. | 38071619 | doi: 10.1016/j.celrep.2023.113569 |
95 | 岡田 航輝, 根本 理子 | Kouki Okada, Michiko Nemoto | Nuclear Transformation of the Marine Pennate Diatom Nitzschia sp. Strain NIES-4635 by Multi-Pulse Electroporation. | Mar Biotechnol (NY). 2023 Dec; 25(6): 1208-1219. | 38071657 | doi: 10.1007/s10126-023-10273-w |
96 | 玉川 克典 | Katsunori Tamagawa | Transcriptomic signatures associated with underlying rapid changes in the early phase brain of bi-directional sex change in Trimma okinawae. | R Soc Open Sci. 2023 Dec; 10(12): 231450. | 38077214 | doi: 10.1098/rsos.231450 |
97 | 小出 陽平 | Yohei Koide | Different contributions of PROG1 and TAC1 to the angular kinematics of the main culm and tillers of wild rice (Oryza rufipogon). | Planta. 2023 Dec 12; 259(1): 19. | 38085356 | doi: 10.1007/s00425-023-04300-2 |
98 | 近藤 伸二 | Shinji Kondo | BRD9 determines the cell fate of hematopoietic stem cells by regulating chromatin state. | Nat Commun. 2023 Dec 15; 14(1): 8372. | 38102116 | doi: 10.1038/s41467-023-44081-6 |
99 | 上野 尚久, 高橋 佑磨 | Takahisa Ueno, Yuma Takahashi | Rapid seasonal changes in phenotypes in a wild Drosophila population. | Sci Rep. 2023 Dec 19; 13(1): 21940. | 38114661 | doi: 10.1038/s41598-023-48571-x |
100 | 黒岩 麻里 | Asato Kuroiwa | Chromosomal-level assembly of Tokudaia osimensis, Tokudaia tokunoshimensis, and Tokudaia muenninki genomes. | Sci Data. 2023 Dec 21; 10(1): 927. | 38129438 | doi: 10.1038/s41597-023-02845-1 |
101 | 佐藤 杏香, 五十川 祐一郎 | Kyoka Sato, Yuichiro Ikagawa | Genome Sequencing Unveils Nomadic Traits of Lactiplantibacillus plantarum in Japanese Post-Fermented Tea. | Curr Microbiol. 2023 Dec 28; 81(1): 52. | 38155273 | doi: 10.1007/s00284-023-03566-9 |
102 | 松田 知成 | Tomonari Matsuda | Prediction of antigen-responding VHH antibodies by tracking the evolution of antibody along the time course of immunization. | Front Immunol. 2023; 14: 1335462. | 38292485 | doi: 10.3389/fimmu.2023.1335462 |
103 | 西井 かなえ | Kanae Nishii | A high quality, high molecular weight DNA extraction method for PacBio HiFi genome sequencing of recalcitrant plants. | Plant Methods. 2023 Apr 29; 19(1): 41. | 37120601 | doi: 10.1186/s13007-023-01009-x |
104 | 山崎 彬 | Akira Yamazaki | A simple method for measuring pollen germination rate using machine learning. | Plant Reprod. 2023 Dec; 36(4): 355-364. | 37278944 | doi: 10.1007/s00497-023-00472-9 |
105 | 丸岡 奈津美 | Natsumi Maruoka | RNA-seq analysis to identify genes related to resting egg production of panarctic Daphnia pulex. | BMC Genomics. 2023 May 17; 24(1): 262. | 37198540 | doi: 10.1186/s12864-023-09369-3 |
106 | 山本 容正 | Yoshimasa Yamamoto | Comparative genome analysis of colistin-resistant Escherichia coli harboring mcr isolated from rural community residents in Ecuador and Vietnam. | PLoS One. 2023; 18(11): e0293940. | 37917755 | doi: 10.1371/journal.pone.0293940 |
107 | 花原 望 | Nozomi Hanahara | Positive selection on ADAM10 builds species recognition in the synchronous spawning coral Acropora. | Front Cell Dev Biol. 2023; 11: 1171495. | 37152284 | doi: 10.3389/fcell.2023.1171495 |
108 | 辺 遍, 齋藤 裕 | Bian Bian, Yutaka Saito | VeloPro: A pipeline integrating Ribo-seq and AlphaFold deciphers association patterns between translation velocity and protein structure features. | Imeta. 2023 Nov; 2(4): e148. | 38868219 | doi: 10.1002/imt2.148 |
109 | 阿部 陽 | Akira Abe | Upcycling rice yield trial data using a weather-driven crop growth model. | Commun Biol. 2023 Jul 21; 6(1): 764. | 37479731 | doi: 10.1038/s42003-023-05145-x |
110 | 阿部 陽 | Akira Abe | Whole-genome analysis of recombinant inbred rice lines reveals a quantitative trait locus on chromosome 3 with genotype-by-environment interaction effects. | G3 (Bethesda). 2023 Jun 01; 13(6): jkad082. | 37052949 | doi: 10.1093/g3journal/jkad082 |
111 | 田崎 啓介 | Keisuke Tasaki | Production of yellow-flowered gentian plants by genetic engineering of betaxanthin pigments. | New Phytol. 2023 Nov; 240(3): 1177-1188. | 37606277 | doi: 10.1111/nph.19218 |
112 | 夏目 俊, 阿部 陽 | Satoshi Natsume, Akira Abe | V-primer: software for the efficient design of genome-wide InDel and SNP markers from multi-sample variant call format (VCF) genotyping data. | Breed Sci. 2023 Sep; 73(4): 415-420. | 38106505 | doi: 10.1270/jsbbs.23018 |
113 | 北崎 一義 | Kazuyoshi Kitazaki | Nuclear DNA segments homologous to mitochondrial DNA are obstacles for detecting heteroplasmy in sugar beet (Beta vulgaris L.). | PLoS One. 2023; 18(8): e0285430. | 37552681 | doi: 10.1371/journal.pone.0285430 |
114 | 宮原 平 | Taira Miyahara | Multi-omics Analyses of Non-GM Tomato Scion Engrafted on GM Rootstocks. | Food Saf (Tokyo). 2023 Sep; 11(3): 41-53. | 37745161 | doi: 10.14252/foodsafetyfscj.D-23-00005 |
115 | 本多 了 | Ryo Honda | Antimicrobial resistome and mobilome in the urban river affected by combined sewer overflows and wastewater treatment effluent. | J Water Health. 2023 Aug; 21(8): 1032-1050. | 37632379 | doi: 10.2166/wh.2023.073 |
116 | Chloe Julie Loes Fourreau, 喜瀬 浩輝 | Chloe Julie Loes Fourreau, Hikari Kise | Genome sizes and repeatome evolution in zoantharians (Cnidaria: Hexacorallia: Zoantharia). | PeerJ. 2023; 11: e16188. | 37868064 | doi: 10.7717/peerj.16188 |
117 | 佐久間 敦丈 | Atsuhiro Sakuma | Expression of type 1 vomeronasal receptors in the olfactory organ of the African lungfish, Protopterus dolloi. | Acta Histochem. 2023 Oct; 125(7): 152078. | 37540956 | doi: 10.1016/j.acthis.2023.152078 |
118 | 西井 かなえ | Kanae Nishii | Target capture and genome skimming for plant diversity studies. | Appl Plant Sci. 2023; 11(4): e11537. | 37601316 | doi: 10.1002/aps3.11537 |
119 | |