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論文のリスト(2015)

2015.01.01 -- 2015.12.31 にユーザによって発表された論文のリスト

2015 年度の年度末アカウント継続申請時に集計した論文

Supercomputer users in authors list (Japanese) Supercomputer users in authors list Title Journal, Volume, Number, Pages PMID DOI
1 矢野 健太郎 Kentaro Yano Plant Omics Data Center: an integrated web repository for interspecies gene expression networks with NLP-based curation. Plant Cell Physiol. 2015 Jan;56(1):e9. 25505034 doi: 10.1093/pcp/pcu188.
2 寺田 愛花, 瀬々 潤 Aika Terada,Jun Sese High-speed westfall-young permutation procedure for genome-wide association studies. BCB '15: Proceedings of the 6th ACM Conference on Bioinformatics, Computational Biology and Health Informatics, September 2015 Pages 17-26 NULL doi.org/10.1145/2808719.2808721
3 浜田 道昭 Michiaki Hamada Learning chromatin states with factorized information criteria. Bioinformatics. 2015 Aug 1;31(15):2426-33. 25810430 doi: 10.1093/bioinformatics/btv163.
4 鈴木 穣 Yutaka Suzuki DB-AT: a 2015 update to the Full-parasites database brings a multitude of new transcriptomic data for apicomplexan parasites. Nucleic Acids Res. 2015 Jan;43(Database issue):D631-6. 25414358 doi: 10.1093/nar/gku1240.
5 二階堂 愛 Itoshi Nikaido MeSH ORA framework: R/Bioconductor packages to support MeSH over-representation analysis BMC Bioinformatics. 2015 Feb 15;16:45. 25887539 doi: 10.1186/s12859-015-0453-z.
6 Adeyemi Babarinde I, 斎藤成也 Isaac Adeyemi Babarinde,Naruya Saitou Whole-genome sequencing of six Mauritian Cynomolgus macaques (Macaca fascicularis) reveals a genome-wide pattern of polymorphisms under extreme population bottleneck. Genome Biol Evol. 2015 Mar 23;7(3):821-30. 25805843 doi: 10.1093/gbe/evv033.
7 菊地 泰生 Taisei Kikuchi Development and validation of SSR markers for the plant-parasitic nematode Subanguina moxaeusing genome assembly of Illumina pair-end reads. Nematology (2015) 17, p515-522 NULL doi:10.1163/15685411-00002885
8 菊地 泰生 Taisei Kikuchi Genome-wide variation in the pinewood nematode Bursaphelenchus xylophilus and its relationship with pathogenic traits. BMC Genomics. 2015 Oct 23;16:845. 26493074 doi: 10.1186/s12864-015-2085-0.
9 高橋 弘喜 Hiroki Takahashi The dynamic balance of import and export of zinc in Escherichia coli suggests a heterogeneous population response to stress. J R Soc Interface. 2015 May 6;12(106):20150069. 25808337 doi: 10.1098/rsif.2015.0069.
10 川舩 かおる Kaoru Kawafune Two different rickettsial bacteria invading Volvox carteri. PLoS One. 2015 Feb 11;10(2):e0116192. 25671568 doi: 10.1371/journal.pone.0116192.
11 岸田 拓士 Takushi Kishida Aquatic adaptation and the evolution of smell and taste in whales Zoological Lett. 2015 Feb 13;1:9. 26605054 doi: 10.1186/s40851-014-0002-z.
12 石井孝司 Koji Ishii Epidemiological and genetic analysis of a 2014 outbreak of hepatitis A in Japan. Vaccine. 2015 Nov 9;33(45):6029-36. 25957664 doi: 10.1016/j.vaccine.2015.04.061.
13 中川草 So Nakagawa Multiple invasions of an infectious retrovirus in cat genomes. Sci Rep. 2015 Feb 2;5:8164. 25641657 doi: 10.1038/srep08164.
14 中川草 So Nakagawa Simian retrovirus 4 induces lethal acute thrombocytopenia in Japanese macaques. J Virol. 2015 Apr;89(7):3965-75. 25609821 doi: 10.1128/JVI.03611-14.
15 加藤 毅 Tsuyoshi Kato Segmental HOG: new descriptor for glomerulus detection in kidney microscopy image. BMC Bioinformatics. 2015 Sep 30;16:316. 26423821 doi: 10.1186/s12859-015-0739-1.
16 程 朝陽 Chaoyang Cheng Loss of function mutations in the rice chromomethylase OsCMT3a cause a burst of transposition. Plant J. 2015 Sep;83(6):1069-81. 26243209 doi: 10.1111/tpj.12952.
17 前原 一満 Kazumitsu Maehara agplus: a rapid and flexible tool for aggregation plots Bioinformatics. 2015 Sep 15;31(18):3046-7. 25995229 doi: 10.1093/bioinformatics/btv322.
18 前原 一満 Kazumitsu Maehara Tissue-specific expression of histone H3 variants diversified after species separation Epigenetics Chromatin. 2015 Sep 17;8:35. 26388943 doi: 10.1186/s13072-015-0027-3.
19 前原 一満 Kazumitsu Maehara Incorporation of histone H3.1 suppresses the lineage potential of skeletal muscle. Nucleic Acids Res. 2015 Jan;43(2):775-86. 25539924 doi: 10.1093/nar/gku1346.
20 今村 拓也 Takuya Imamura Gene activation-associated long noncoding RNAs function in mouse preimplantation development. Development. 2015 Mar 1;142(5):910-20. 25633350 doi: 10.1242/dev.116996.
21 佐藤 健吾 Kengo Sato Resequencing of the common marmoset genome improves genome assemblies and gene-coding sequence analysis Sci Rep. 2015 Nov 20;5:16894. 26586576 doi: 10.1038/srep16894.
22 佐藤 行人, 山中 裕樹, 岩崎 渉 K Sato,H Yamanaka,W Iwasaki MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species. R Soc Open Sci. 2015 Jul 22;2(7):150088. 26587265 doi: 10.1098/rsos.150088.
23 近藤 伸二 Shinji Kondo Draft Genome Sequence of the Archiascomycetous Yeast Saitoella complicata. Genome Announc. 2015 May 28;3(3):e00220-15. 26021914 doi: 10.1128/genomeA.00220-15.
24 山本 泰智 Yasunori Yamamoto Colil: a database and search service for citation contexts in the life sciences domain J Biomed Semantics. 2015 Oct 19;6:38. 26500753 doi: 10.1186/s13326-015-0037-x.
25 北住 愛 Ai Kitazumi Implications of miR166 and miR159 induction to the basal response mechanisms of an andigena potato (Solanum tuberosum subsp. andigena) to salinity stress, predicted from network models in Arabidopsis Genome. 2015 Jan;58(1):13-24. 25955479 doi: 10.1139/gen-2015-0011.
26 亀田 倫史 Tomoshi Kameda Predicting RNA Duplex Dimerization Free-Energy Changes upon Mutations Using Molecular Dynamics Simulations J Phys Chem Lett. 2015 Nov 5;6(21):4348-51. 26722970 doi: 10.1021/acs.jpclett.5b01984.
27 原 雄一郎 Yuichiro Hara Optimizing and benchmarking de novo transcriptome sequencing: from library preparation to assembly evaluation BMC Genomics. 2015 Nov 18;16:977. 26581708 doi: 10.1186/s12864-015-2007-1.
28 三浦 季子 Toshiko Miura Diversity of Fungi on Decomposing Leaf Litter in a Sugarcane Plantation and Their Response to Tillage Practice and Bagasse Mulching: Implications for Management Effects on Litter Decomposition Microb Ecol. 2015 Oct;70(3):646-58. 25933637 doi: 10.1007/s00248-015-0620-9.
29 黒田 真也 Shinya Kuroda Glucose Homeostatic Law: Insulin Clearance Predicts the Progression of Glucose Intolerance in Humans PLoS One. 2015 Dec 1;10(12):e0143880. 26623647 doi: 10.1371/journal.pone.0143880.
30 遠藤 一佳 Kazuyoshi Endo Proteome analysis of shell matrix proteins in the brachiopod Laqueus rubellus. Proteome Sci. 2015 Aug 15;13:21. 26279640 doi: 10.1186/s12953-015-0077-2.
31 遠藤 明仁, 谷澤 靖洋 Akihito Endo,Yasuhiro Tanizawa Comparative genomics of Fructobacillus spp. and Leuconostoc spp. reveals niche-specific evolution of Fructobacillus spp. BMC Genomics. 2015 Dec 29;16:1117. 26715526 doi: 10.1186/s12864-015-2339-x.
32 谷澤 靖洋 Yasuhiro Tanizawa Complete genome sequence and analysis of Lactobacillus hokkaidonensis LOOC260(T), a psychrotrophic lactic acid bacterium isolated from silage. BMC Genomics. 2015 Mar 25;16(1):240. 25879859 doi: 10.1186/s12864-015-1435-2.
33 門田 有希 Yuki Monden Construction of a linkage map based on retrotransposon insertion polymorphisms in sweetpotato via high-throughput sequencing. Breed Sci. 2015 Mar;65(2):145-53. 26069444 doi: 10.1270/jsbbs.65.145.
34 門田 有希 Yuki Monden シイタケ（Lentinula edodes）におけるレトロトランスポゾン挿入多型を利用した High-Throughput な品種判定マーカーの開発. DNA 多型 23, p34-38 (2015) NULL NULL
35 溝手 朝子 Tomoko Mizote Identification of self-growth-inhibiting compounds lauric acid and 7-(Z)-tetradecenoic acid from Helicobacter pylori. Microbiology (Reading). 2015 Jun;161(6):1231-9. 25767109 doi: 10.1099/mic.0.000077.
36 内村 有邦 Arikuni Uchimura Germline mutation rates and the long-term phenotypic effects of mutation accumulation in wild-type laboratory mice and mutator mice. Genome Res. 2015 Aug;25(8):1125-34. 26129709 doi: 10.1101/gr.186148.114.
37 小埜 栄一郎 Eiichiro Ono The Draft Genome of Hop (Humulus lupulus), an Essence for Brewing. Plant Cell Physiol. 2015 Mar;56(3):428-41. 25416290 doi: 10.1093/pcp/pcu169.
38 松波 雅俊 Masatoshi Matsunami Transcriptome analysis of predator- and prey-induced phenotypic plasticity in the Hokkaido salamander (Hynobius retardatus). Mol Ecol. 2015 Jun;24(12):3064-76. 25943778 doi: 10.1111/mec.13228.
39 高橋 鉄美 Tetsumi Takahashi A RAD-based phylogenetics for Orestias fishes from Lake Titicaca. Mol Phylogenet Evol. 2015 Dec;93:307-17. 26291568 doi: 10.1016/j.ympev.2015.08.012.
40 韓 栄春 Rungchun Han Transcriptome Analysis of Nine Tissues to Discover Genes Involved in the Biosynthesis of Active Ingredients in Sophora flavescens. Biol Pharm Bull. 2015;38(6):876-83. 26027827 doi: 10.1248/bpb.b14-00834.
41 韓 栄春 Rungchun Han Transcriptomic landscape of Pueraria lobata demonstrates potential for phytochemical study. Front Plant Sci. 2015 Jun 22;6:426. 26157443 doi: 10.3389/fpls.2015.00426.
42 岩崎 渉 Wataru Iwasaki GroupTracker: Video tracking system for multiple animals under severe occlusion. Comput Biol Chem. 2015 Aug;57:39-45. 25736254 doi: 10.1016/j.compbiolchem.2015.02.006.
43 岩崎 渉 Wataru Iwasaki Somatic Primary piRNA Biogenesis Driven by cis-Acting RNA Elements and trans-Acting Yb. Cell Rep. 2015 Jul 21;12(3):429-40. 26166564 doi: 10.1016/j.celrep.2015.06.035.