|
Supercomputer users in authors list (Japanese) |
Supercomputer users in authors list |
Title |
Journal, Volume, Number, Pages |
PMID |
DOI |
| 1 |
谷澤 靖洋, 伊藤 佑, 中村 保一, 矢倉 勝 |
Yasuhiro Tanizawa,Tasuku Ito,Yasukazu Nakamura,Masaru Yagura |
Chromatin Organization in Early Land Plants Reveals an Ancestral Association between H3K27me3, Transposons, and Constitutive Heterochromatin. |
Curr Biol. 2020 Feb 24;30(4):573-588.e7. |
32004456 |
doi: 10.1016/j.cub.2019.12.015. |
| 2 |
谷澤 靖洋, 中村 保一, 遠野 雅徳 |
Yasuhiro Tanizawa,Yasukazu Nakamura,Masanori Tohno |
Reclassification of Clostridium diolis Biebl and Sproeer 2003 as a later heterotypic synonym of Clostridium beijerinckii Donker 1926 (Approved Lists 1980) emend. Keis et al. 2001 |
Int J Syst Evol Microbiol. 2020 Apr;70(4):2463-2466. |
32068529 |
doi: 10.1099/ijsem.0.004059. |
| 3 |
太田 明伸 |
Akinobu Ota |
Tandem Paired Nicking Promotes Precise Genome Editing with Scarce Interference by p53. |
Cell Rep. 2020 Jan 28;30(4):1195-1207.e7. |
31995758 |
doi: 10.1016/j.celrep.2019.12.064. |
| 4 |
坊農 秀雅 |
Hidemasa Bono |
All of gene expression (AOE): An integrated index for public gene expression databases |
PLoS One. 2020 Jan 24;15(1):e0227076. |
31978081 |
doi: 10.1371/journal.pone.0227076. |
| 5 |
坊農 秀雅 |
Hidemasa Bono |
Meta-Analysis of Hypoxic Transcriptomes from Public Databases |
Biomedicines. 2020 Jan 9;8(1):10. |
31936636 |
doi: 10.3390/biomedicines8010010. |
| 6 |
井原 邦夫 |
Kunio Ihara |
gas1 Mutation Extends Chronological Lifespan via Pmk1 and Sty1 MAPKs in Schizosaccharomyces pombe |
Biosci Biotechnol Biochem. 2020 Feb;84(2):330-337. |
31601154 |
doi: 10.1080/09168451.2019.1676695. |
| 7 |
福永 津嵩 |
Tsukasa Fukunaga |
Targeting the TR4 nuclear receptor-mediated lncTASR/AXL signaling with tretinoin increases the sunitinib sensitivity to better suppress the RCC progression |
Oncogene. 2020 Jan;39(3):530-545. |
31501521 |
doi: 10.1038/s41388-019-0962-8.^M |
| 8 |
小野 肇 |
Hajime Ono |
Functional characterization of olfactory receptors in three Dacini fruit flies (Diptera: Tephritidae) that respond to 1-nonanol analogs as components in the rectal glands |
Comp Biochem Physiol B Biochem Mol Biol. 2020 Jan;239:110346. |
31499218 |
doi: 10.1016/j.cbpb.2019.110346. |
| 9 |
加藤 有己 |
Yuki Kato |
Bivartect: accurate and memory-saving breakpoint detection by direct read comparison |
Bioinformatics. 2020 May 1;36(9):2725-2730. |
31985791 |
doi: 10.1093/bioinformatics/btaa059. |
| 10 |
井戸川 雅史 |
Masashi Idogawa |
p53-induced ARVCF modulates the splicing landscape and supports the tumor suppressive function of p53. |
Oncogene. 2020 Mar;39(10):2202-2211. |
31827232 |
doi: 10.1038/s41388-019-1133-7. |
| 11 |
保坂 健太郎 |
Kentaro Hosaka |
Complementary molecular methods reveal comprehensive phylogenetic diversity integrating inconspicuous lineages of early-diverged wood-decaying mushrooms |
Sci Rep. 2020 Feb 20;10(1):3057. |
32080243 |
doi: 10.1038/s41598-020-59620-0. |
| 12 |
豊田 敦, 水口 洋平 |
Yohei Minakuchi,Atsushi Toyoda |
The mechanoreceptor DEG-1 regulates cold tolerance in Caenorhabditis elegans. |
EMBO Rep. 2020 Mar 4;21(3):e48671. |
32009302 |
doi: 10.15252/embr.201948671. |
| 13 |
藤井 雅史 |
Masashi Fujii |
Affinity of rhodopsin to raft enables the aligned oligomer formation fro
m dimers: Coarse-grained molecular dynamics simulation of disk membranes |
PLoS One. 2020 Feb 7;15(2):e0226123. |
32032370 |
doi: 10.1371/journal.pone.0226123. |
| 14 |
漆原 範子 |
Noriko Urushibara |
Novel staphylococcal cassette chromosome mec (SCCmec) type XIV (5A) and a truncated SCCmec element in SCC composite islands carrying speG in ST5 MRSA in Japan. |
J Antimicrob Chemother. 2020 Jan 1;75(1):46-50. |
31617906 |
doi: 10.1093/jac/dkz406. |
| 15 |
西山 智明 |
Tomoaki Nishiyama |
Anthoceros genomes illuminate the origin of land plants and the unique biology of hornworts |
Nat Plants. 2020 Mar;6(3):259-272. |
32170292 |
doi: 10.1038/s41477-020-0618-2. |
| 16 |
青木 誠志郎 |
Seishiro Aoki |
Assessment of Polygala paniculata (Polygalaceae) characteristics for evolutionary studies of legume-rhizobia symbiosis. |
J Plant Res. 2020 Jan;133(1):109-122. |
31828682 |
doi: 10.1007/s10265-019-01159-x. |
| 17 |
松井 求, 岩崎 渉 |
Motomu Matsui,Wataru Iwasaki |
Graph Splitting: A Graph-Based Approach for Superfamily-Scale Phylogenetic Tree Reconstruction |
Syst Biol. 2020 Mar 1;69(2):265-279. |
31364707 |
doi: 10.1093/sysbio/syz049. |
| 18 |
末永 俊和 |
Toshikazu Suenaga |
Complete Genome Sequence of Pseudomonas putida Strain TS312, Harboring a HdtS-Type N-Acyl-Homoserine Lactone Synthase, Isolated from a Paper Mill |
Microbiol Resour Announc. 2020 Mar 26;9(13):e00055-20. |
32217673 |
doi: 10.1128/MRA.00055-20. |
| 19 |
中村 圭吾, 草間 和哉 |
Keigo Nakamura,Kazuya Kusama |
IFNT-independent effects of intrauterine extracellular vesicles (EVs) in cattle. |
Reproduction. 2020 May;159(5):503-511. |
32103820 |
doi: 10.1530/REP-19-0314. |
| 20 |
井口 亮 |
Akira Iguchi |
Deep-sea amphipods around cobalt-rich ferromanganese crusts: Taxonomic diversity and selection of candidate species for connectivity analysis |
PLoS One. 2020 Feb 6;15(2):e0228483. |
32027722 |
doi: 10.1371/journal.pone.0228483. |
| 21 |
瀬川 高弘 |
Takahiro Segawa |
Evaluation of reported sediment samples from 20 Ma using a molecular phylogenetic approach: comment on Liu et al. (2017) |
Environ Microbiol. 2020 Mar;22(3):813-818. |
31984637 |
doi: 10.1111/1462-2920.14923. |
| 22 |
藤田 賢一 |
Ken-Ichi Fujita |
URH49 exports mRNA by remodeling complex formation and mediating the NXF1-dependent pathway. |
Biochim Biophys Acta Gene Regul Mech. 2020 Feb;1863(2):194480. |
31917363 |
doi: 10.1016/j.bbagrm.2020.194480. |
| 23 |
吉田 健太郎 |
Kentaro Yoshida |
Diploid genome differentiation conferred by RNA sequencing-based survey of genome-wide polymorphisms throughout homoeologous loci in Triticum and Aegilops |
BMC Genomics. 2020 Mar 20;21(1):246. |
32192452 |
doi: 10.1186/s12864-020-6664-3. |
| 24 |
佐藤 康成 |
Yasunari Satoh |
Characteristics of induced mutations in offspring derived from irradiated mouse spermatogonia and mature oocytes. |
Sci Rep. 2020 Jan 8;10(1):37. |
31913321 |
doi: 10.1038/s41598-019-56881-2. |
| 25 |
岩切 淳一 |
Junichi Iwakiri |
LncRNA-dependent nuclear stress bodies promote intron retention through SR protein phosphorylation |
EMBO J. 2020 Feb 3;39(3):e102729. |
31782550 |
doi: 10.15252/embj.2019102729. |
| 26 |
黒田 大祐 |
Daisuke Kuroda |
How the protonation state of a phosphorylated amino acid governs molecular recognition: insights from classical molecular dynamics simulations |
FEBS Lett. 2020 Mar;594(5):903-912. |
31713840 |
doi: 10.1002/1873-3468.13674. |
| 27 |
佐藤 賢二 |
Kenji Satou |
Classification of Brainwaves for Sleep Stages by High-Dimensional FFT Features from EEG Signals |
Appl. Sci. 2020, 10(5), 1797. |
NULL |
doi: 10.3390/app10051797 |
| 28 |
鈴木 真也 |
Shinya Suzuki |
Probabilistic model based on circular statistics for quantifying coverage depth dynamics originating from DNA replication |
PeerJ. 2020 Mar 27;8:e8722. |
32257635 |
doi: 10.7717/peerj.8722. |
| 29 |
吉田 光範 |
Mitsunori Yoshida |
Complete Genome Sequence of Mycobacterium xenopi JCM15661T, Obtained Using Nanopore and Illumina Sequencing Technologies |
Microbiol Resour Announc. 2020 Mar 5;9(10):e01583-19. |
32139563 |
doi: 10.1128/MRA.01583-19. |
| 30 |
神沼 英里, 中村 保一 |
Eli Kaminuma, Yasukazu Nakamura |
DDBJ Data Analysis Challenge: a machine learning competition to predict Arabidopsis chromatin feature annotations from DNA sequences. |
Genes Genet Syst. 2020 Apr 22;95(1):43-50. |
32213716 |
doi: 10.1266/ggs.19-00034. |
| 31 |
高田 美信 |
Yoshinobu Takada |
Characterization of self-incompatible Brassica napus lines lacking SP11 expression |
Genes Genet Syst. 2020 Aug 27;95(3):111-118. |
32493878 |
doi: 10.1266/ggs.19-00050. |
| 32 |
佐藤 行人 |
Yukuto Sato |
Development of 22 Microsatellite Markers for Assessing Hybridization in the Genus Gekko (Squamata: Gekkonidae) |
Current Herpetology 39(1): 66-74, February 2020. |
NULL |
doi.org/10.5358/hsj.39.66 |
| 33 |
上田 真保子 |
Mahoko Takahashi Ueda |
Efficient differentiation and polarization of primary cultured neurons on poly(lactic acid) scaffolds with microgrooved structures. |
Sci Rep. 2020 Apr 21;10(1):6716. |
32317746 |
doi: 10.1038/s41598-020-63537-z. |
| 34 |
福多 賢太郎 |
Kentaro Fukuta |
The Genetic Basis of Morphological Diversity in Domesticated Goldfish |
Curr Biol. 2020 Jun 22;30(12):2260-2274.e6. |
32392470 |
doi: 10.1016/j.cub.2020.04.034. |
| 35 |
鳥丸 猛 |
Takeshi Torimaru |
Assessments of fine-scale spatial patterns of SNPs in an old-growth beech forest |
Heredity (Edinb). 2020 Oct;125(4):240-252. |
32606418 |
doi: 10.1038/s41437-020-0334-8. |
| 36 |
根本 理子, 小布施 祈織 |
Michiko Nemoto,Kiori Obuse |
Comparative Gene Analysis Focused on Silica Cell Wall Formation: Identification of Diatom-Specific SET Domain Protein Methyltransferases |
Mar Biotechnol (NY). 2020 Aug;22(4):551-563. |
32488507 |
doi: 10.1007/s10126-020-09976-1. |
| 37 |
松尾 芳隆 |
Yoshitaka Matsuo |
RQT complex dissociates ribosomes collided on endogenous RQC substrate SDD1 |
Nat Struct Mol Biol. 2020 Apr;27(4):323-332. |
33001289 |
doi: 10.1007/s10126-020-09976-1. |
| 38 |
松尾 芳隆 |
Yoshitaka Matsuo |
The Ccr4-Not complex monitors the translating ribosome for codon optimality |
Science. 2020 Apr 17;368(6488):eaay6912. |
32299921 |
doi: 10.1126/science.aay6912. |
| 39 |
松尾 芳隆 |
Yoshitaka Matsuo |
Ribosomal protein S7 ubiquitination during ER stress in yeast is associated with selective mRNA translation and stress outcome |
Sci Rep. 2020 Nov 12;10(1):19669. |
33184379 |
doi: 10.1038/s41598-020-76239-3. |
| 40 |
美世 一守, 岩崎 渉 |
Kazumori Mise,Wataru Iwasaki |
Environmental atlas of prokaryotes enables powerful and intuitive habitat-based analysis of community structures. |
iScience. 2020 Sep 29;23(10):101624. |
33117966 |
doi: 10.1016/j.isci.2020.101624. |
| 41 |
矢原 耕史 |
Koji Yahara |
Shotgun metagenome sequencing identification of a set of genes encoded by Actinomyces associated with medication-related osteonecrosis of the jaw |
PLoS One. 2020 Nov 30;15(11):e0241676. |
33253207 |
doi: 10.1371/journal.pone.0241676. |
| 42 |
久米 慶太郎 |
Keitaro Kume |
Mitochondrial Genomes of Hemiarma marina and Leucocryptos marina Revised the Evolution of Cytochrome c Maturation in Cryptista |
ORIGINAL RESEARCH published: 02 June 2020. |
NULL |
doi.org/10.3389/fevo.2020.00140 |
| 43 |
久米 慶太郎 |
Keitaro Kume |
Barthelonids represent a deep-branching metamonad clade with mitochondrion-related organelles predicted to generate no ATP |
Proc Biol Sci. 2020 Sep 9;287(1934):20201538. |
32873198 |
doi: 10.1098/rspb.2020.1538. |
| 44 |
SHENTON MATTHEW |
Matt Shenton |
Evolution and Diversity of the Wild Rice Oryza officinalis Complex, across Continents, Genome Types, and Ploidy Levels |
Genome Biol Evol. 2020 Apr 1;12(4):413-428. |
32125373 |
doi: 10.1093/gbe/evaa037. |
| 45 |
浜端 朋子 |
Tomoko Hamabata |
Natal origin identification of green turtles in the North Pacific by genome-wide population analysis with limited DNA samples |
ORIGINAL RESEARCH published: 07 August 2020. |
NULL |
doi.org/10.3389/fmars.2020.00658 |
| 46 |
福永 津嵩, 岩崎 渉 |
Tsukasa Fukunaga,Wataru Iwasaki |
Logicome Profiler: Exhaustive detection of statistically significant logic relationships from comparative omics data |
PLoS One. 2020 May 1;15(5):e0232106. |
32357172 |
doi: 10.1371/journal.pone.0232106. |
| 47 |
土屋 貴穂, 秋光 信佳 |
Takaho Tsuchiya,Nobuyoshi Akimitsu |
Stability of RNA sequences derived from the coronavirus genome in human cells |
Biochem Biophys Res Commun. 2020 Jul 5;527(4):993-999. |
32446559 |
doi: 10.1016/j.bbrc.2020.05.008. |
| 48 |
松前 ひろみ |
Hiromi Matsumae |
Ancient Jomon genome sequence analysis sheds light on migration patterns of early East Asian populations |
Commun Biol. 2020 Aug 25;3(1):437. |
32843717 |
doi: 10.1038/s42003-020-01162-2. |
| 49 |
古舘 健 |
Ken Furudate |
Clonal evolution of acute myeloid leukemia revealed by high-throughput single-cell genomics |
Nat Commun. 2020 Oct 21;11(1):5327. |
33087716 |
doi: 10.1038/s41467-020-19119-8 |
| 50 |
遠藤 明仁 |
Akihito Endo |
Kunkecin A, a New Nisin Variant Bacteriocin Produced by the Fructophilic Lactic Acid Bacterium, Apilactobacillus kunkeei FF30-6 Isolated From Honey Bees |
Front Microbiol. 2020 Sep 16;11:571903. |
32493209 |
doi: 10.1186/s12866-020-01830-7 |
| 51 |
遠藤 明仁 |
Akihito Endo |
PCR-based screening, isolation, and partial characterization of motile lactobacilli from various animal feces |
BMC Microbiol. 2020 Jun 3;20(1):142. |
32493209 |
doi: 10.1186/s12866-020-01830-7 |
| 52 |
高木 亙 |
Wataru Takagi |
Facilitated NaCl Uptake in the Highly Developed Bundle of the Nephron in Japanese Red Stingray Hemitrygon akajei Revealed by Comparative Anatomy and Molecular Mapping |
Zoolog Sci. 2020 Oct;37(5):458-466. |
32972087 |
doi: 10.2108/zs200038 |
| 53 |
鈴木 郁夫 |
Ikuo Suzuki |
YIPF5 mutations cause neonatal diabetes and microcephaly through endoplasmic reticulum stress |
J Clin Invest. 2020 Dec 1;130(12):6338-6353. |
33164986 |
doi: 10.1172/JCI141455 |
| 54 |
西原 昌宏, 田崎 啓介 |
Masahiro Nishihara, Keisuke Tasaki |
Molecular characterization of an anthocyanin-related glutathione S- transferase gen
e in Japanese gentian with the CRISPR/Cas9 system |
BMC Plant Biol. 2020 Aug 6;20(1):370. |
32762648 |
doi: 10.1186/s12870-020-02565-3 |
| 55 |
谷澤 靖洋, 中村 保一, 遠野 雅徳 |
Yasuhiro Tanizawa,Yasukazu Nakamura,Masanori Tohno |
Lactobacillus buchneri subsp. silagei subsp. nov., isolated from rice grain silage
. |
Int J Syst Evol Microbiol. 2020 May;70(5):3111-3116. |
32250236 |
doi: 10.1099/ijsem.0.004138 |
| 56 |
谷澤 靖洋, 中村 保一 |
Yasuhiro Tanizawa,Yasukazu Nakamura,Masanori Tohno |
Whole-exome sequencing of 79 xenografts as a potential approach for the identification of genetic variants associated with sensitivity to cytotoxic anticancer drugs. |
PLoS One. 2020 Sep 28;15(9):e0239614. |
32986753 |
doi: 10.1371/journal.pone.0239614 |
| 57 |
佐藤 晋也 |
Shinya Sato |
Genome-enabled phylogenetic and functional reconstruction of an araphid pennate diatom Plagiostriata sp. CCMP470, previously assigned as a radial centric diatom, and its bacterial commensal |
Sci Rep. 2020 Jun 10;10(1):9449. |
32523048 |
doi: 10.1038/s41598-020-65941-x |
| 58 |
福島 健児 |
Kenji Fukushima |
Amalgamated cross-species transcriptomes reveal organ-specific propensity in gene expression evolution |
Nat Commun. 2020 Sep 8;11(1):4459. |
32900997 |
doi: 10.1038/s41467-020-18090-8 |
| 59 |
安河内 彦輝 |
Yoshiki Yasukochi |
Transcriptomic changes in young Japanese males after exposure to acute hypobaric hypoxia |
Front Genet. 2020 Sep 8;11:559074. |
33101380 |
doi: 10.3389/fgene.2020.559074 |
| 60 |
小林 和也 |
Kazuya Kobayashi |
Dimorphic flowers modify the visitation order of pollinators from male to female flowers |
Sci Rep. 2020 Jun 19;10(1):9965. |
32561882 |
doi: 10.1038/s41598-020-66525-5 |
| 61 |
加藤 有己 |
Yuki Kato |
A comparative analysis of ADAR mutant mice reveals site-specific regulation of RNA editing |
RNA. 2020 Apr;26(4):454-469. |
31941663 |
doi: 10.1261/rna.072728.119 |
| 62 |
加藤 有己 |
Yuki Kato |
ADAR1 regulates early T cell development via MDA5-dependent and -independent pathways |
J Immunol. 2020 Apr 15;204(8):2156-2168. |
32169840 |
doi: 10.4049/jimmunol.1900929 |
| 63 |
宮澤 清太 |
Seita Miyazawa |
Pattern blending enriches the diversity of animal colorations |
Sci Adv. 2020 Dec 2;6(49):eabb9107 |
33268371 |
doi: 10.1126/sciadv.abb9107 |
| 64 |
来見田 遥一, 齋藤 裕 |
Yoichi Kurumida,Yutaka Saito |
Predicting antibody affinity changes upon mutations by combining multiple predictors |
Sci Rep.2020 Nov 11;10(1):19533 |
33177627 |
doi: 10.1038/s41598-020-76369-8 |
| 65 |
西井 かなえ |
Kanae Nishii |
QTL dissection of floral traits in Streptocarpus (Gesneriaceae) |
Netherlands Journal of Plant Breeding, 01 Jul 2020, 216(7):110 |
NULL |
doi: 10.1007/s10681-020-02647-1 |
| 66 |
大島 一里 |
Kazusato Ohshima |
The evolutionary history and global spatio-temporal dynamics of potato virus Y |
Virus Evol. 2020 Nov 21;6(2):veaa056 |
33324488 |
doi: 10.1093/ve/veaa056 |
| 67 |
竹下 和貴 |
Kazutaka Takeshita |
Genomic Comparison of Insect Gut Symbionts from Divergent Burkholderia Subclades |
Genes (Basel). 2020 Jul 3;11(7):744. |
32635398 |
doi: 10.3390/genes11070744 |
| 68 |
笠原 浩太 |
Kota Kasahara |
myPresto/omegagene 2020: a molecular dynamics simulation engine for virtual-system coupled sampling |
Biophys Physicobiol. 2020 Oct 15;17:140-146. |
33240741 |
doi: 10.2142/biophysico.BSJ-2020013 |
| 69 |
曽 超 |
Chao Zeng |
RNA-seq analysis reveals localization-associated alternative splicing across 13 cell lines |
Genes (Basel). 2020 Jul 18;11(7):820. |
32708427 |
doi: 10.3390/genes11070820 |
| 70 |
齋藤 裕 |
Yutaka Saito |
Existence and possible roles of independent non-CpG methylation in the mammalian brain |
DNA Res. 2020 Aug 1;27(4):dsaa020. |
33524135 |
doi: 10.1093/dnares/dsaa020 |
| 71 |
Rai Amit, ライ メガ |
Amit Rai,Megha Rai |
Multiomics-based characterization of specialized metabolites biosynthesis in Cornus Officinalis |
DNA Res. 2020 Apr 1;27(2):dsaa009. |
32426807 |
doi: 10.1093/dnares/dsaa009. |
| 72 |
佐藤 行人 |
Yukuto Sato |
Understanding leptospirosis eco-epidemiology by environmental DNA metabarcoding of irrigation water from two agro-ecological regions of Sri Lanka |
PLoS Negl Trop Dis. 2020 Jul 23;14(7):e0008437. |
32701971 |
doi: 10.1371/journal.pntd.0008437 |
| 73 |
佐藤 行人 |
Yukuto Sato |
Population genetic structure and evolution of Batesian mimicry in Papilio polytes from the Ryukyu Islands, Japan, analyzed by genotyping‐by‐sequencing |
Ecol Evol. 2020 Dec 24;11(2):872-886. |
33520172 |
doi: 10.1002/ece3.7092 |
| 74 |
郷 康広 |
Yasuhiro Go |
Redundant type II cadherins define neuroepithelial cell states for cytoarchitectonic robustness. |
Commun Biol. 2020 Oct 15;3(1):574. |
33060832 |
doi: 10.1038/s42003-020-01297-2 |
| 75 |
郷 康広 |
Yasuhiro Go |
Transcriptome analysis revealed misregulated gene expression in blastoderms of interspecific chicken and Japanese quail F1 hybrids |
PLoS One. 2020 Oct 12;15(10):e0240183. |
33044996 |
doi: 10.1371/journal.pone.0240183 |
| 76 |
郷 康広 |
Yasuhiro Go |
AUTS2 regulation of synapses for proper synaptic inputs and social communication |
iScience. 2020 Jun 26;23(6):101183. |
32498016 |
doi: 10.1016/j.isci.2020.101183 |
| 77 |
藤井 雅史, 土屋 貴穂, 黒田 真也 |
Masashi Fujii,Takaho Tsuchiya,Shinya Kuroda |
Transomics analysis reveals allosteric and gene regulation axes for altered hepatic glucose-responsive metabolism in obesity |
Sci Signal. 2020 Dec 1;13(660):eaaz1236. |
33262292 |
doi: 10.1126/scisignal.aaz1236 |
| 78 |
藤井 雅史, 黒田 真也 |
Masashi Fujii,Shinya Kuroda |
Monitoring and mathematical modeling of mitochondrial ATP in myotubes at single-cell level reveals two distinct population with different kinetics |
Quantitative Biology 2020, 8(3): 228-237 |
NULL |
doi: 10.1007/s40484-020-0211-8 |
| 79 |
近藤 伸二, 水口 洋平, 豊田 敦 |
Shinji Kondo,Yohei Minakuchi,Atsushi Toyoda |
Comparative genomic analyses illuminate the distinct evolution of megabats within Chiroptera |
DNA Res. 2020 Aug 1;27(4):dsaa021. |
32966557 |
doi: 10.1093/dnares/dsaa021 |
| 80 |
水口 洋平, 豊田 敦 |
Yohei Minakuchi, Atsushi Toyoda |
A genome database for a Japanese population of the larvacean Oikopleura dioica |
Dev Growth Differ. 2020 Aug;62(6):450-461. |
32677034 |
doi: 10.1111/dgd.12689 |
| 81 |
滝沢 拓己, 岩切 淳一 |
Hiroki Takizawa,Junichi Iwakiri |
RintC: fast and accuracy-aware decomposition of distributions of RNA secondary structures with extended logsumexp |
BMC Bioinformatics. 2020 May 24;21(1):210. |
32448174 |
doi: 10.1186/s12859-020-3535-5 |
| 82 |
滝沢 拓己, 岩切 淳一 |
Hiroki Takizawa,Junichi Iwakiri |
Finding the direct optimal RNA barrier energy and improving pathways with an arbitrary energy model |
Bioinformatics. 2020 Jul 1;36(Suppl_1):i227-i235. |
32657400 |
doi: 10.1093/bioinformatics/btaa469 |
| 83 |
山崎 曜 |
Yo Y Yamasaki |
Ecosystem size predicts the probability of speciation in migratory freshwater fish |
Mol Ecol. 2020 Aug;29(16):3071-3084. |
32168408 |
doi: 10.1111/mec.15415 |
| 84 |
山﨑 曜 |
Yo Y Yamasaki |
Genome-wide patterns of divergence and introgression after secondary contact between Pungitius sticklebacks |
Philos Trans R Soc Lond B Biol Sci. 2020 Aug 31;375(1806):20190548. |
32654635 |
doi: 10.1098/rstb.2019.0548 |
| 85 |
寺井 悟朗 |
Goro Terai |
Improving the prediction accuracy of protein abundance in Escherichia coli using mRNA accessibility |
Nucleic Acids Res. 2020 Aug 20;48(14):e81. |
32504488 |
doi: 10.1093/nar/gkaa481 |
| 86 |
寺井 悟朗 |
Goro Terai |
Exchange of endogenous and heterogeneous yeast terminators in Pichia pastoris to tune mRNA stability and gene expression |
Nucleic Acids Res. 2020 Dec 16;48(22):13000-13012. |
33257988 |
doi: 10.1093/nar/gkaa1066 |
| 87 |
杉原 優 |
Yu Sugihara |
Genome analyses reveal the hybrid origin of the staple crop white Guinea yam (Dioscorea rotundata) |
Proc Natl Acad Sci U S A. 2020 Dec 15;117(50):31987-31992. |
33268496 |
doi: 10.1073/pnas.2015830117 |
| 88 |
小野口 玲菜, 秋光 信佳 |
Rena Onoguchi-Mizutani,Nobuyoshi Akimitsu |
Long noncoding RNA U90926 is crucial for herpes simplex virus type 1 proliferation in murine retinal photoreceptor cells. |
Sci Rep. 2020 Nov 10;10(1):19406. |
33173149 |
doi: 10.1038/s41598-020-76450-2 |
| 89 |
秋光 信佳, 川田 健太郎 |
Kentaro Kawata,Nobuyoshi Akimitsu |
Metabolic labeling of RNA using multiple ribonucleoside analogs enables the simultaneous evaluation of RNA synthesis and degradation rates. |
Genome Res. 2020 Oct;30(10):1481-1491. |
32843354 |
doi: 10.1101/gr.264408.120 |
| 90 |
秋光 信佳 |
Nobuyoshi Akimitsu |
Systematic Analysis of Targets of Pumilio-mediated mRNA Decay Reveals that PUM1 Repression by DNA Damage Activates Translesion Synthesis |
Cell Rep. 2020 May 5;31(5):107542. |
32375027 |
doi: 10.1016/j.celrep.2020.107542 |
| 91 |
高橋 鉄美 |
Tetsumi Takahashi |
A ddRAD-based population genetics and phylogenetics of an endangered freshwater fish from Japan |
Conservation Genetics (2020) 21:641-652 |
NULL |
doi:10.1007/s10592-020-01275-5 |
| 92 |
横溝 匠 |
Takumi Yokomizo |
Changes in transcriptomic response to salinity stress induce the brackish water adaptation in a freshwater snail |
Sci Rep. 2020 Sep 29;10(1):16049. |
32994494 |
doi: 10.1038/s41598-020-73000-8 |
| 93 |
水野 信之 |
Nobuyuki Mizuno |
The genotype-dependent phenotypic landscape of quinoa in salt tolerance and key growth traits |
DNA Res. 2020 Aug 1;27(4):dsaa022. |
33051662 |
doi: 10.1093/dnares/dsaa022 |
| 94 |
渡邊 美穂 |
Miho Watanabe |
Proposal of Desulfosarcina ovata subsp. sediminis subsp. nov., a novel toluene-degrading sulfate-reducing bacterium isolated from tidal flat sediment of Tokyo Bay |
Syst Appl Microbiol. 2020 Sep;43(5):126109. |
32847784 |
doi: 10.1016/j.syapm.2020.126109 |
| 95 |
渡邊 美穂 |
Miho Watanabe |
Aquipluma nitroreducens gen. nov. sp. nov., a novel facultatively anaerobic bacterium isolated from a freshwater lake |
Int J Syst Evol Microbiol. 2020 Dec;70(12):6408-6413. |
33156751 |
doi: 10.1099/ijsem.0.004551. |
| 96 |
石川 麻乃 |
Asano Ishikawa |
Multiple waves of freshwater colonisation of the three-spined stickleback in the Japanese Archipelago. |
BMC Evol Biol. 2020 Nov 3;20(1):143. |
33143638 |
doi: 10.1186/s12862-020-01713-5. |
| 97 |
石川 麻乃 |
Asano Ishikawa |
Differences in the contributions of sex-linkage and androgen regulation to sex-biased gene expression in juvenile and adult sticklebacks. |
J Evol Biol. 2020 Jun 13. |
32533720 |
doi: 10.1111/jeb.13662. |
| 98 |
菊池 一徳 |
Ittoku Kikuchi |
Complete chemical structures of human mitochondrial tRNAs |
Nat Commun. 2020 Aug 28;11(1):4269. |
32859890 |
doi: 10.1038/s41467-020-18068-6. |
| 99 |
高橋 弘喜 |
Hiroki Takahashi |
Draft Genome Sequence of Aspergillus tubingensis WU-2223L, a Citric Acid-Producing Filamentous Fungus Belonging to Aspergillus Section Nigri |
Microbiol Resour Announc. 2020 Aug 13;9(33):e00702-20. |
32817151 |
doi: 10.1128/MRA.00702-20. |
| 100 |
筒井 直昭 |
Naoaki Tsutsui |
Transcriptomic Analysis of the Kuruma Prawn Marsupenaeus japonicus Reveals Possible Peripheral Regulation of the Ovary |
Front Endocrinol (Lausanne). 2020 Aug 19;11:541. |
32973675 |
doi: 10.3389/fendo.2020.00541. |
| 101 |
市村 和也 |
Kazuya Ichimura |
Arabidopsis SMN2/HEN2, Encoding DEAD-box RNA Helicase, Governs Proper Expression of the Resistance Gene SMN1/RPS6 and Is Involved in Dwarf, Autoimmune Phenotypes of mekk1 and mpk4 Mutants |
Plant Cell Physiol. 2020 Aug 1;61(8):1507-1516. |
32467981 |
doi: 10.1093/pcp/pcaa071. |
| 102 |
市村 和也 |
Kazuya Ichimura |
The rare sugar D-tagatose protects plants from downy mildews and is a safe fungicidal agrochemical |
Commun Biol. 2020 Aug 5;3(1):423. |
32759958 |
doi: 10.1038/s42003-020-01133-7. |
| 103 |
西山 智明 |
Tomoaki Nishiyama |
Ethylene signaling mediates host invasion by parasitic plants |
Sci Adv. 2020 Oct 28;6(44):eabc2385. |
33115743 |
doi: 10.1126/sciadv.abc2385. |
| 104 |
大野 聡, 黒田 真也 |
Satoshi Ohno,Shinya Kuroda |
Kinetic trans-omic analysis reveals key regulatory mechanisms for insulin-regulated glucose metabolism in adipocytes |
iScience. 2020 Aug 20;23(9):101479. |
32891058 |
doi: 10.1016/j.isci.2020.101479. |
| 105 |
北住 愛 |
Ai Kitazumi |
Contributions of adaptive plant architecture to transgressive salinity tolerance in recombinant inbred lines of rice: molecular mechanisms based on transcriptional networks |
Front Genet. 2020 Oct 23;11:594569. |
33193743 |
doi: 10.3389/fgene.2020.594569. |
| 106 |
北住 愛 |
Ai Kitazumi |
Xenobiotic effects of chlorine dioxide to escherichia coli o157:h7 on non-host tomato environment revealed by transcriptional network modeling: implications to adaptation and selection |
FFront Microbiol. 2020 Jun 3;11:1122. |
32582084 |
doi: 10.3389/fmicb.2020.01122. |
| 107 |
瀬川 高弘 |
Takahiro Segawa |
Redox stratification within cryoconite granules influences the nitrogen cycle on glacier |
FEMS Microbiol Ecol. 2020 Oct 20;96(11):fiaa199. |
32990745 |
doi: 10.1093/femsec/fiaa199. |
| 108 |
森 宣仁 |
Nobuhito Mori |
Expression of genes involved in drug metabolism differs between perfusable 3D liver tissue and conventional 2D‐cultured hepatocellular carcinoma cells |
FEBS Open Bio. 2020 Oct;10(10):1985-2002. |
32794647 |
doi: 10.1002/2211-5463.12948. |
| 109 |
山口 雅也 |
Masaya Yamaguchi |
Role of BgaA as a Pneumococcal Virulence Factor Elucidated by Molecular Evolutionary Analysis. |
Front Microbiol. 2020 Sep 24;11:582437. |
33072054 |
doi: 10.3389/fmicb.2020.582437. |
| 110 |
加藤 大明 |
Hiroaki Kato |
Lumi-Map, a Real-Time Luciferase Bioluminescence Screen of Mutants Combined with MutMap, Reveals Arabidopsis Genes Involved in PAMP-Triggered Immunity |
Mol Plant Microbe Interact. 2020 Dec;33(12):1366-1380. |
32876529 |
doi: 10.1094/MPMI-05-20-0118-TA. |
| 111 |
中川 草 |
So Nakagawa |
Comprehensive genomic analysis reveals dynamic evolution of endogenous retroviruses that code for retroviral-like protein domains |
Mob DNA. 2020 Sep 17;11:29. |
32963593 |
doi: 10.1186/s13100-020-00224-w |
| 112 |
吉田 真明 |
Masa-Aki Yoshida |
Genomic and Transcriptomic Analyses of Bioluminescence Genes in the Enope Squid Watasenia scintillans |
Mar Biotechnol (NY). 2020 Dec;22(6):760-771. |
33098466 |
doi: 10.1007/s10126-020-10001-8 |
| 113 |
中山 省悟 |
Shogo Nakayama |
Loss of Fbxw7 Impairs Development of and Induces Heterogeneous Tumor Formation in the Mouse Mammary Gland |
Cancer Res. 2020 Dec 15;80(24):5515-5530. |
33234509 |
doi: 10.1158/0008-5472.CAN-20-0271 |
| 114 |
岩切 淳一 |
Junichi Iwakiri |
MeCP2 Levels Regulate the 3D Structure of Heterochromatic Foci in Mouse Neurons |
J Neurosci. 2020 Nov 4;40(45):8746-8766. |
33046553 |
doi: 10.1523/JNEUROSCI.1281-19.2020 |
| 115 |
安澤 隼人 |
Hayato Anzawa |
Theoretical characterisation of strand cross-correlation in ChIP-seq |
BMC Bioinformatics. 2020 Sep 22;21(1):417. |
32962634 |
doi: 10.1186/s12859-020-03729-6 |
| 116 |
濱田 麻友子 |
Mayuko Hamada |
A Reference Genome from the Symbiotic Hydrozoan, Hydra viridissima |
G3 (Bethesda). 2020 Nov 5;10(11):3883-3895. |
32900905 |
doi: 10.1534/g3.120.401411 |
| 117 |
坂山 英俊 |
Hidetoshi Sakayama |
Induction of sexual reproduction reveals the presence of heterothallic Spirogyra strains (Zygnematophyceae, Streptophyta) |
Phycological Research 2020; 68: 263-268 |
NULL |
doi: 10.1111/pre.12436 |
| 118 |
牛島 幸一郎 |
Koichiro Ushijima |
Postharvest Properties of Ultra-Late Maturing Peach Cultivars and Their Attributions to Melting Flesh (M) Locus: Re-evaluation of M Locus in Association With Flesh Texture |
Front Plant Sci. 2020 Nov 26;11:554158. |
33324428 |
doi: 10.3389/fpls.2020.554158 |
| 119 |
石川 彰人 |
Akito Ishikawa |
Functional shell matrix proteins tentatively identified by asymmetric snail shell morphology |
Sci Rep. 2020 Jun 17;10(1):9768. |
32555253 |
doi: 10.1038/s41598-020-66021-w |
| 120 |
熊谷 雄太郎 |
Yutaro Kumagai |
Zinc Finger Protein St18 Protects against Septic Death by Inhibiting VEGF-A from Macrophages |
Cell Rep. 2020 Jul 14;32(2):107906. |
32668247 |
doi: 10.1016/j.celrep.2020.107906 |
| 121 |
徳田 直子 |
Naoko Tokuda |
Quantitative Analysis of Spatial Distributions of All tRNA Genes in Budding Yeast |
Biophys J. 2020 May 5;118(9):2181-2192. |
31951810 |
doi: 10.1016/j.bpj.2019.12.029 |
| 122 |
井関 洸太朗 |
Kohtaro Iseki |
Effect of seed sett size on sprouting, shoot growth, and tuber yield of white guinea yam (Dioscorea rotundata) |
PLANT PRODUCTION SCIENCE2020, VOL. 23, NO. 1, 75-80 |
NULL |
doi: 10.1080/1343943X.2019.1667835 |
| 123 |
笠原 浩太 |
Kota Kasahara |
Effects of ion-water Lennard-Jones potentials on the hydration dynamics around a monovalent atomic ion in molecular dynamics simulations |
Molecular Simulation Volume 46, 2020 - Issue 2,Pages 83-91 |
NULL |
doi: 10.1080/08927022.2019.1675883 |
| 124 |
小林 和也 |
Kazuya Kobayashi |
Transcriptomic analysis of epigenetic modification genes in the termite Reticulitermes speratus |
Insect Sci. 2020 Apr;27(2):202-211. |
30203565 |
doi: 10.1111/1744-7917.12640. |
NIG Supercomputer