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Supercomputer users in authors list (Japanese) |
Supercomputer users in authors list |
Title |
Journal, Volume, Number, Pages |
PMID |
DOI |
| 1 |
松波 雅俊 |
Masatoshi Matsunami |
Vertebrate paralogous conserved noncoding sequences may be related to gene expressions in brain. |
Genome Biol Evol. 2013;5(1):140-50. |
23267051 |
doi: 10.1093/gbe/evs128 |
| 2 |
二階堂 愛 |
Itoshi Nikaido |
Context-dependent wiring of Sox2 regulatory networks for self-renewal of embryonic and trophoblast stem cells. |
Mol Cell. 2013 Nov 7;52(3):380-92. |
24120664 |
doi: 10.1016/j.molcel.2013.09.002 |
| 3 |
二階堂 愛 |
Itoshi Nikaido |
Quartz-Seq: a highly reproducible and sensitive single-cell RNA sequencing method, reveals non-genetic gene-expression heterogeneity. |
Genome Biol. 2013 Apr 17;14(4):R31. |
23594475 |
doi: 10.1186/gb-2013-14-4-r31 |
| 4 |
細道 一善, 井ノ上 逸朗 |
Kazuyoshi Hosomichi, Ituro Inoue |
Phase-defined complete sequencing of the HLA genes by next-generation sequencing. |
BMC Genomics. 2013 May 28;14:355. |
23714642 |
doi: 10.1186/1471-2164-14-355 |
| 5 |
飯山 和弘 |
Kazuhiro Iiyama |
Draft Genome Sequence of Paenibacillus popilliae ATCC 14706T |
Journal of Insect Biotechnology and Sericology, 2013 Volume 82 Issue 2 Pages 2_045-2_048 |
NULL |
doi: 10.11416/jibs.82.2_045 |
| 6 |
佐々木 直文 |
Naobumi Sasaki |
The first symbiont-free genome sequence of marine red alga, Susabi-nori (Pyropia yezoensis). |
PLoS One. 2013;8(3):e57122. |
23536760 |
doi: 10.1371/journal.pone.0057122 |
| 7 |
中川 草 |
So Nakagawa |
Dynamic evolution of endogenous retrovirus-derived genes expressed in bovine conceptuses during the period of placentation. |
Genome Biol Evol. 2013;5(2):296-306. |
23335121 |
doi: 10.1093/gbe/evt007 |
| 8 |
中川 草 |
So Nakagawa |
Phylogenetic and structural diversity in the feline leukemia virus env gene. |
PLoS One. 2013 Apr 11;8(4):e61009. |
23593376 |
doi: 10.1371/journal.pone.0061009 |
| 9 |
中川 草 |
So Nakagawa |
DNA-binding specificity changes in the evolution of forkhead transcription factors. |
Proc Natl Acad Sci U S A. 2013 Jul 23;110(30):12349-54. |
23836653 |
doi: 10.1073/pnas.1310430110 |
| 10 |
中川 草 |
So Nakagawa |
Identification of a novel subgroup of Koala retrovirus from Koalas in Japanese zoos. |
J Virol. 2013 Sep;87(17):9943-8. |
23834806 |
doi: 10.1128/JVI.01385-13 |
| 11 |
中川 草 |
So Nakagawa |
Fematrin-1 is involved in fetomaternal cell-to-cell fusion in Bovinae placenta and has contributed to diversity of ruminant placentation. |
J Virol. 2013 Oct;87(19):10563-72. |
23864631 |
doi: 10.1128/JVI.01398-13 |
| 12 |
中川 草 |
So Nakagawa |
Transcriptional regulation of two conceptus interferon tau genes expressed in Japanese black cattle during peri-implantation period. |
PLoS One. 2013 Nov 27;8(11):e80427. |
24348910 |
doi: 10.1371/journal.pone.0080427 |
| 13 |
野口 英樹 |
Hideki Noguchi |
Coelacanth genomes reveal signatures for evolutionary transition from water to land. |
Genome Res. 2013 Oct;23(10):1740-8. |
23878157 |
doi: 10.1101/gr.158105.113 |
| 14 |
寺田 愛花, 瀬々 潤 |
Aika Terada, Jun Sese |
Statistical significance of combinatorial regulations. |
Proc Natl Acad Sci U S A. 2013 Aug 6;110(32):12996-3001. |
23882073 |
doi: 10.1073/pnas.1302233110 |
| 15 |
高田 豊行 |
Toyoyuki Takada |
The ancestor of extant Japanese fancy mice contributed to the mosaic genomes of classical inbred strains. |
Genome Res. 2013 Aug;23(8):1329-38. |
23604024 |
doi: 10.1101/gr.156497.113 |
| 16 |
長崎 英樹, 望月 孝子, 神沼 英里, 中村 保一 |
Hideki Nagasaki, Takako Mochizuki,Eli Kaminuma,Yasukazu Nakamura |
DDBJ read annotation pipeline: a cloud computing-based pipeline for high-throughput analysis of next-generation sequencing data. |
DNA Res. 2013 Aug;20(4):383-90. |
23657089 |
doi: 10.1093/dnares/dst017 |
| 17 |
近藤 伸二 |
Shinji Kondo |
Base composition and nucleosome density in exonic and intronic regions in genes of the filamentous ascomycetes Aspergillus nidulans and Aspergillus oryzae. |
Gene. 2013 Aug 1;525(1):5-10. |
23664982 |
doi: 10.1016/j.gene.2013.04.077 |
| 18 |
大田 達郎 |
Tazro Ohta |
Experimental design-based functional mining and characterization of high-throughput sequencing data in the sequence read archive. |
PLoS One. 2013 Oct 22;8(10):e77910. |
24167589 |
doi: 10.1371/journal.pone.0077910 |
| 19 |
柴田 朋子 |
Tomoko F Shibata |
Complete Genome Sequence of Burkholderia sp. Strain RPE64, Bacterial Symbiont of the Bean Bug Riptortus pedestris. |
Genome Announc. 2013 Jul 5;1(4):e00441-13. |
23833137 |
doi: 10.1128/genomeA.00441-13 |
| 20 |
前原 一満,大川 恭行 |
Kazumitsu Maehara,Jun Odawara |
A co-localization model of paired ChIP-seq data using a large ENCODE data set enables comparison of multiple samples. |
Nucleic Acids Res. 2013 Jan 7;41(1):54-62. |
23125363 |
doi: 10.1093/nar/gks1010 |
| 21 |
浜田 道昭 |
Michiaki Hamada |
PBSIM: PacBio reads simulator--toward accurate genome assembly |
Bioinformatics. 2013 Jan 1;29(1):119-21. |
23129296 |
doi: 10.1093/bioinformatics/bts649 |
| 22 |
小柳 亮 |
Ryo Koyanagi |
MarinegenomicsDB: an integrated genome viewer for community-based annotation of genomes. |
Zoolog Sci. 2013 Oct;30(10):797-800. |
24125644 |
doi: 10.2108/zsj.30.797 |
| 23 |
小笠原 理 |
Osamu Ogasawara |
DDBJ new system and service refactoring. |
Nucleic Acids Res. 2013 Jan;41(Database issue):D25-9. |
23180790 |
doi: 10.1093/nar/gks1152 |
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