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Supercomputer users in authors list (Japanese) |
Supercomputer users in authors list |
Title |
Journal, Volume, Number, Pages |
PMID |
DOI |
| 1 |
小笠原 理 |
Osamu Ogasawara |
DDBJ progress report: a new submission system for leading to a correct annotation. |
Nucleic Acids Res. 2014 Jan;42(Database issue):D44-9. |
24194602 |
doi: 10.1093/nar/gkt1066 |
| 2 |
津田 勝利 |
Katsutoshi Tsuda |
Genome-wide study of KNOX regulatory network reveals brassinosteroid catabolic genes important for shoot meristem function in rice. |
Plant Cell. 2014 Sep;26(9):3488-500. |
25194027 |
doi: 10.1105/tpc.114.129122 |
| 3 |
野澤 昌文 |
Masafumi Nozawa |
Tissue- and stage-dependent dosage compensation on the neo-X chromosome in Drosophila pseudoobscura. |
Mol Biol Evol. 2014 Mar;31(3):614-24. |
24307686 |
doi: 10.1093/molbev/mst239 |
| 4 |
鈴木 穣 |
Yutaka Suzuki |
Interactive transcriptome analysis of malaria patients and infecting Plasmodium falciparum. |
Genome Res. 2014 Sep;24(9):1433-44. |
25091627 |
doi: 10.1101/gr.158980.113 |
| 5 |
赤間 悟, 瀬々 潤 |
Yutaka Suzuki,Jun Sese |
Genome-wide quantification of homeolog expression ratio revealed nonstochastic gene regulation in synthetic allopolyploid Arabidopsis. |
Nucleic Acids Res. 2014 Apr;42(6):e46. |
24423873 |
doi: 10.1093/nar/gkt1376 |
| 6 |
今村 拓也 |
Takuya Imamura |
Bidirectional promoters are the major source of gene activation-associated non-coding RNAs in mammals. |
BMC Genomics. 2014 Jan 17;15:35. |
24438357 |
doi: 10.1186/1471-2164-15-35 |
| 7 |
細道 一善, 長崎 英樹, 井ノ上 逸朗 |
Kazuyoshi Hosomichi,Hideki Nagasaki,Ituro Inoue |
A Bead-based Normalization for Uniform Sequencing depth (BeNUS) protocol for multi-samples sequencing exemplified by HLA-B. |
BMC Genomics. 2014 Aug 4;15(1):645. |
25087472 |
doi: 10.1186/1471-2164-15-645 |
| 8 |
清水 顕史 |
Akifumi Shimizu |
Genome-wide marker development for the wheat D genome based on single nucleotide polymorphisms identified from transcripts in the wild wheat progenitor Aegilops tauschii. |
Theor Appl Genet. 2014 Feb;127(2):261-271. |
24158251 |
doi: 10.1007/s00122-013-2215-5 |
| 9 |
吉武 和敏, 笠原 雅弘 |
Kazutoshi Yoshitake, Masahiro Kasahara |
Performance comparison of second- and third-generation sequencers using a bacterial genome with two chromosomes. |
BMC Genomics. 2014 Aug 21;15(1):699. |
25142801 |
doi: 10.1186/1471-2164-15-699 |
| 10 |
松井 淳 |
Atsushi Matsui |
Extreme expansion of the olfactory receptor gene repertoire in African elephants and evolutionary dynamics of orthologous gene groups in 13 placental mammals. |
Genome Res. 2014 Sep;24(9):1485-96. |
25053675 |
doi: 10.1101/gr.169532.113 |
| 11 |
阿部 貴志 |
Takashi Abe |
Visualization of genome signatures of eukaryote genomes by batch-learning self-organizing map with a special emphasis on Drosophila genomes. |
Biomed Res Int. 2014;2014:985706. |
24741568 |
doi: 10.1155/2014/985706 |
| 12 |
中川 草 |
So Nakagawa |
Genetic diversity of feline morbilliviruses isolated in Japan. |
J Gen Virol. 2014 Jul;95(Pt 7):1464-1468. |
24728711 |
doi: 10.1099/vir.0.065029-0 |
| 13 |
中川 草 |
So Nakagawa |
Construction of an infectious clone of simian foamy virus of Japanese macaque (SFVjm) and phylogenetic analyses of SFVjm isolates. |
Gene. 2014 Sep 10;548(1):149-54. |
25017058 |
doi: 10.1016/j.gene.2014.07.025 |
| 14 |
谷澤 靖洋, 遠野 雅徳 |
Yasuhiro Tanizawa,Masanori Tohno |
Draft Genome Sequence of Weissella oryzae SG25T, Isolated from Fermented Rice Grains. |
Genome Announc. 2014 Jul 10;2(4):e00667-14. |
25013139 |
doi: 10.1128/genomeA |
| 15 |
谷澤 靖洋, 遠野 雅徳 |
Yasuhiro Tanizawa,Masanori Tohno |
Draft Genome Sequence of Lactobacillus oryzae Strain SG293T. |
Genome Announc. 2014 Aug 28;2(4):e00861-14. |
25169865 |
doi: 10.1128/genomeA.00861-14 |
| 16 |
杉原 稔 |
Minoru Sugihara |
Dynamics of bovine opsin bound to G-protein fragments. |
J Struct Biol. 2014 Oct;188(1):79-86. |
25138898 |
doi: 10.1016/j.jsb.2014.08.001 |
| 17 |
岩崎 渉 |
Wataru Iwasaki |
MetaMetaDB: a database and analytic system for investigating microbial habitability. |
PLoS One. 2014 Jan 27;9(1):e87126. |
24475242 |
doi: 10.1371/journal.pone.0087126 |
| 18 |
岩崎 渉 |
Wataru Iwasaki |
CLOCK-controlled polyphonic regulation of circadian rhythms through canonical and noncanonical E-boxes. |
Mol Cell Biol. 2014 May;34(10):1776-87. |
24591654 |
doi: 10.1128/MCB.01465-13 |
| 19 |
岩崎 渉 |
Wataru Iwasaki |
Parallel selection on gene copy number variations through evolution of three-spined stickleback genomes. |
BMC Genomics. 2014 Aug 29;15(1):735. |
25168270 |
doi: 10.1186/1471-2164-15-735 |
| 20 |
尾崎 遼,岩崎 渉 |
Haruka Ozaki, Wataru Iwasaki |
Discovery of osmotic sensitive transcription factors in fish intestine via a transcriptomic approach. |
BMC Genomics. 2014 Dec 18;15(1):1134. |
25520040 |
doi: 10.1186/1471-2164-15-1134 |
| 21 |
亀田 倫史 |
Tomoshi Kameda |
Arginine side chains as a dispersant for individual single-wall carbon nanotubes. |
Chemistry. 2014 Apr 22;20(17):4922-30. |
24711170 |
doi: 10.1002/chem.201400003 |
| 22 |
亀田 倫史 |
Tomoshi Kameda |
Interaction of arginine with Capto MMC in multimodal chromatography. |
J Chromatogr A. 2014 Apr 18;1338:58-66. |
24642397 |
doi: 10.1016/j.chroma.2014.02.053 |
| 23 |
亀田 倫史 |
Tomoshi Kameda |
Mechanism of protein desorption from 4-mercaptoethylpyridine resins by arginine solutions. |
J Chromatogr A. 2014 Dec 19;1373:141-8. |
25435461 |
doi: 10.1016/j.chroma.2014.11.032 |
| 24 |
河合 洋介 |
Yosuke Kawai |
Evolution and diversity of the 2-oxoglutarate-dependent dioxygenase superfamily in plants. |
Plant J. 2014 Apr;78(2):328-43. |
24547750 |
doi: 10.1111/tpj.12479 |
| 25 |
河合 洋介 |
Yosuke Kawai |
Expansion of specialized metabolism-related superfamily genes via whole genome duplications during angiosperm evolution |
Plant Biotechnology, 2014 Volume 31 Issue 5 Pages 579-584 |
NULL |
doi: 10.5511/plantbiotechnology.14.0901a |
| 26 |
前原 一満 |
Kazumitsu Maehara |
Heterochromatin dynamics during the differentiation process revealed by the DNA methylation reporter mouse, MethylRO. |
Stem Cell Reports. 2014 Jun 3;2(6):910-24. |
2493647 |
doi: 10.1016/j.stemcr.2014.05.008 |
| 27 |
前原 一満 |
Kazumitsu Maehara |
Regulation of RNA polymerase II activation by histone acetylation in single living cells. |
Nature. 2014 Dec 11;516(7530):272-5. |
25252976 |
doi: 10.1038/nature13714 |
| 28 |
飯山 和弘 |
Kazuhiro Iiyama |
Draft Genome Sequence of Entomopathogenic Serratia liquefaciens Strain FK01. |
Genome Announc. 2014 Jun 26;2(3):e00609-14. |
24970828 |
doi: 10.1128/genomeA.00609-14 |
| 29 |
門田 有希 |
Yuki Monden |
Efficient DNA fingerprinting based on the targeted sequencing of active retrotransposon insertion sites using a bench-top high-throughput sequencing platform. |
DNA Res. 2014 Oct;21(5):491-8. |
24935865 |
doi: 10.1093/dnares/dsu015 |
| 30 |
門田 有希 |
Yuki Monden |
Efficient screening of long terminal repeat retrotransposons that show high insertion polymorphism via high-throughput sequencing of the primer binding site. |
Genome. 2014 May;57(5):245-52. |
25072847 |
doi: 10.1139/gen-2014-0031 |
| 31 |
門田 有希 |
Yuki Monden |
Application of iPBS in high-throughput sequencing for the development of retrotransposon-based molecular markers |
Current Plant Biology Volume 1, August 2014, Pages 40-44 |
NULL |
doi: 10.1016/j.cpb.2014.09.001 |
| 32 |
門田 有希 |
Yuki Monden |
新規活性型レトロトランスポゾンTriRe-1の挿入多型を利用したHigh-throughputなコムギ品種判定マーカーの開発 |
DNA多型 = DNA polymorphism. 2014.7. vol. 22 no. 1, p.60-65 |
NULL |
NULL |
| 33 |
矢野 雅大 |
Masahiro Yano |
CLAST: CUDA implemented large-scale alignment search tool. |
BMC Bioinformatics. 2014 Dec 11; |
25495907 |
doi: 10.1186/s12859-014-0406-y |
| 34 |
城地 保昌 |
Yasumasa Joti |
Chromatin structure revealed by X-ray scattering analysis and computational modeling. |
Methods. 2014 Dec;70(2-3):154-61. |
25168089 |
doi: 10.1016/j.ymeth.2014.08.008 |
| 35 |
柴田 朋子 |
Tomoko F Shibata |
Whole-Genome Sequence of Burkholderia sp. Strain RPE67, a Bacterial Gut Symbiont of the Bean Bug Riptortus pedestris. |
Genome Announc. 2014 Jun 19;2(3):e00556-14. |
24948758 |
doi: 10.1128/genomeA.00556-14 |
| 36 |
千葉 啓和 |
Hirokazu Chiba |
Improvement of domain-level ortholog clustering by optimizing domain-specific sum-of-pairs score. |
BMC Bioinformatics. 2014 May 18;15:148. |
24885064 |
doi: 10.1186/1471-2105-15-148 |
| 37 |
笠原 浩太 |
Kota Kasahara |
A novel approach of dynamic cross correlation analysis on molecular dynamics simulations and its application to Ets1 dimer-DNA complex. |
PLoS One. 2014 Nov 7;9(11):e112419. |
25380315 |
doi: 10.1371/journal.pone.0112419 |
| 38 |
菊地 泰生 |
Taisei Kikuchi |
Distribution and evolution of glycoside hydrolase family 45 cellulases in nematodes and fungi. |
BMC Evol Biol. 2014 Apr 1;14:69. |
24690293 |
doi: 10.1186/1471-2148-14-69 |
| 39 |
菊地 泰生 |
Taisei Kikuchi |
Summarizing specific profiles in Illumina sequencing from whole-genome amplified DNA. |
DNA Res. 2014 Jun;21(3):243-54. |
24353264 |
doi: 10.1093/dnares/dst054 |
| 40 |
佐藤 賢二 |
Kenji Satou |
D-IMPACT: A Data Preprocessing Algorithm to Improve the Performance of Clustering |
JSEA 2014, 7, p639-654 |
NULL |
doi: 10.4236/jsea.2014.78059 |
| 41 |
佐藤 賢二 |
Kenji Satou |
Predicting residue contacts for protein-protein interactions by integration of multiple information |
JBiSE, 2014, 7, p28-37 |
NULL |
doi: 10.4236/jbise.2014.71005 |
| 42 |
飯田 哲史 |
Tetsushi Iida |
Mudi, a web tool for identifying mutations by bioinformatics analysis of whole-genome sequence. |
Genes Cells. 2014 Jun;19(6):517-27. |
4766403 |
doi: 10.1111/gtc.12151 |
| 43 |
飯田 哲史 |
Tetsushi Iida |
Population genomics of the fission yeast Schizosaccharomyces pombe. |
PLoS One. 2014 Aug 11;9(8):e104241. |
2014 |
25111393 |
doi: 10.1371/journal.pone.0104241 |
| 44 |
花田 耕介 |
Kousuke Hanada |
Phytochrome controls alternative splicing to mediate light responses in Arabidopsis. |
Proc Natl Acad Sci U S A. 2014 Dec 30;111(52):18781-6. |
25512548 |
doi: 10.1073/pnas.1407147112 |
| 45 |
黒田 真也 |
Shinya Kuroda |
Reconstruction of insulin signal flow from phosphoproteome and metabolome data. |
Cell Rep. 2014 Aug 21;8(4):1171-83. |
2014 |
25131207 |
doi: 10.1016/j.celrep.2014.07.021 |
| 46 |
Tsai Isheng Jason, 菊地 泰生 |
Isheng J Tsai, Taisei Kikuchi |
Comparative genomics of Taphrina fungi causing varying degrees of tumorous deformity in plants. |
Genome Biol Evol. 2014 Apr;6(4):861-72. |
24682155 |
doi: 10.1093/gbe/evu067 |
| 47 |
Tsai Isheng Jason |
Isheng J Tsai |
The genome of the sparganosis tapeworm Spirometra erinaceieuropaei isolated from the biopsy of a migrating brain lesion. |
Genome Biol. 2014;15(11):510. |
25413302 |
doi: 10.1186/PREACCEPT-2413673241432389 |
| 48 |
Tsai Isheng Jason |
Isheng J Tsai |
Assessment of helminth biodiversity in wild rats using 18S rDNA based metagenomics. |
PLoS One. 2014 Oct 23;9(10):e110769. |
25340824 |
doi: 10.1371/journal.pone.0110769 |
| 49 |
Tsai Isheng Jason |
Isheng J Tsai |
Whipworm genome and dual-species transcriptome analyses provide molecular insights into an intimate host-parasite interaction. |
Nat Genet. 2014 Jul;46(7):693-700. |
24929830 |
doi: 10.1038/ng.3010 |
| 50 |
高野 翔, 木下 乃梨子 |
Sho Takano, Noriko Kinoshita |
Genome-wide single nucleotide polymorphisms and insertion-deletions of Oryza sativa L. subsp. japonica cultivars grown near the northern limit of rice cultivation |
Mol Breeding (2014) |
NULL |
doi: 10.1007/s11032-014-0093-4 |
| 51 |
Kuppuraj Gopi |
Gopi Kuppuraj |
Conformational behavior of flavin adenine dinucleotide: conserved stereochemistry in bound and free states. |
J Phys Chem B. 2014 Nov 26;118(47):13486-97. |
25389798 |
doi: 10.1021/jp507629n |
| 52 |
Male エドワード ウイジャヤ, 浜田 道昭 |
Edward Wijaya,Michiaki Hamada |
Reference-free prediction of rearrangement breakpoint reads. |
Bioinformatics. 2014 Sep 15;30(18):2559-67. |
24876376 |
doi: 10.1093/bioinformatics/btu360 |
| 53 |
青木 誠志郎 |
Seishiro Aoki |
Evolutionary dynamics of nitrogen fixation in the legume-rhizobia symbiosis. |
PLoS One. 2014 Apr 1;9(4):e93670. |
24691447 |
doi: 10.1371/journal.pone.0093670 |
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