Data Submission
Databases
Supercomputer
Activities
About DDBJ
The NIG Supercomputer
System Overview
Applications
Advanced Guides
System Status
Reports
English ▾
日本語
English
NIG Supercomputer(2025)
Information Security Policy (ISO27001)
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ISMS Certificate
System Architecture
Hardware
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Supercomputer (2025 hardware)
Using Lustre FS
Software
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JobScheduler
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How to use Slurm
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Batch Jobs
Parallel Jobs
Submitting array jobs
Interactive Jobs
Specifying Job Time in Slurm
Other Commands
Container
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Apptainer (Singularity)
BioContainers Apptainer (Singularity) Images
spack
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Installing spack
How to use spack
Analysis pipeline
CopyTool
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How to use Archaea tools
How to use Aspera client(ascp)
How to use SraToolkit
DevelopmentEnvironment
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CUDA
R
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RStudio Server
Rust
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Rust
TypeScript
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Node.js, TypeScript
C/C++ (GCC: GNU Compiler Collection)
Go
C/C++ (Intel Compiler)
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AI Library
Numeric Calculation
Other Languages
Parallel Computing Library
Debugger
Profiler
Java の使い方
Jupyter Lab
Jupyter Notebook
C/C++ (NVIDIA HPC Compiler)
Python
Software Update Information
Database
How to start using the NIG supercomputer system
Using General Analysis Division
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Preparation for use (The General Analysis division)
How to Login to the Gateway node (The general analysis division)
How to Login to the Interactive node (The general analysis division)
Slurm Partitions（The general analysis division）
Grid Engine Queue Type
Data file transfer（The general analysis division）
advance reservation
Using large-scale storage
Using Personal Genome Division
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Preparation for use（The Personal Genome Analysis division）
Overview of How to Use the personal genome analysis division
How to Login（The Personal Genome Analysis division）
How to Use CPU Nodes in the Personal Genome Analysis Division
Using the Accelerator-optimised node Type 2 (L40S Node)
Preparation for Using Parabricks
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Preparation for Using Parabricks
Running fq2bam with Parabricks
Notes on Job Submission in the Personal Genome Analysis Division
DDBJ Group Cloud
Data file transfer（The Personal Genome Analysis division）
FAQ
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faq_software
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FAQ: bash
FAQ: SSH
FAQ: Slurm
FAQ: scp etc.
FAQ: Archaea tools(formerly HCPtools)
Aspera
faq_general_analysis_division
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Logging in
SSH public key Registration Procedure(mac)
SSH public key Registration Procedure(Windows)
faq_personal_genome
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FAQ: SSL-VPN, FortiClient
faq_ssl-vpn_install
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Installing the SSL-VPN Client software FortiClient VPN(Linux)
Installing the SSL-VPN Client software FortiClient VPN(MacOS)
Installing the SSL-VPN Client software FortiClient VPN(Windows)
ssl-vpn_config_file
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Configure the SSL-VPN client (Linux)
Configure the SSL-VPN client (Mac)
Configure the SSL-VPN client (Windows)
faq_ssl-vpn_connection
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How to connect to the VPN (Linux)
How to connect to the VPN (MacOS)
How to connect to the VPN (Windows)
faq_linux_basic
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FAQ：Linux Knowledge
faq_application
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How to sign the pledge
Account Application System
Usage plan table
Applying for a renewal of FY
Change Storage Capacity
faq_os_migration
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Questions related to reinstallation of analysis environments
Questions about behavior at login
old_docs
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Supercomputer (2019) Terms of Use
hardware
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Current supercomputers (2019 hardware)
software
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JobScheduler
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Grid Engine Overview
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Array Jobs(array job)
Example of batch job execution
Batch Jobs (batch job)
Interactive Jobs (interactive job)
Other Commands
Parallel Jobs (parallel job)
CopyTool
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CentOS
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Installing HCP tools (CentOS 7)
How to write the configuration file
general_analysis_division
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Grid Engine キューの種類
personal_genome_division
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Using Parabricks on GPU nodes
Submission of Your Usage Plan
RIAS®️ Visualization
How to Use CPU Nodes in the Personal Genome Analysis Division
(This page is being prepared and will be available soon.)
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How to Login（The Personal Genome Analysis division）
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Using the Accelerator-optimised node Type 2 (L40S Node)
The NIG Supercomputer
The NIG Supercomputer