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Install Manual

Configuration and usage​

Installing jq​

The command jq is essential, so if you don't have it, install it.

The following command checks if jq exists. If it exists, the path to jq is returned. If it does not exist, an error is returned with a message that it does not exist.

which jq

If it does not exist, use the following command to get jq and grant execute permission. The following example assumes that ~/bin is present in the PATH environment variable. If not, execute mkdir ~/bin and add ~/bin to the PATH environment variable.

curl -L -o ~/bin/jq https://github.com/stedolan/jq/releases/download/jq-1.6/jq-linux64
chmod 755 ~/bin/jq

Execute which jq again to ensure jq is available.

How to set up and run services​

There is a script to set up this system and run the service.

Running the script​

Log in to the guacamole virtual machine.

Use the following commands to install the essentials and run the service.

cp /usr/local/shared_data/imputation-server/imputation-desktop/scripts/install.sh install.sh
./install.sh

By default, the essentials are installed under $HOME/sapporo-install.

If you want to change the installation directory, change INSTALLDIR in the script.

The script will install the following in the specified directory.

  • Python 3.9.7
  • Node.js v14.17.6
  • ImputationServer web ui
  • Sapporo web 1.0.10
  • Sapporo Service 1.0.16

Installation completed.

Note: If you are asked for input during the process, enter 'n'.​

During script execution, if the following screen appears and waits for input, enter 'n' and continue. (After pressing 'n', press the Enter key.)

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Starting and stopping​

The following three services are automatically started when you run the installation script.

  • ImputationServer web ui
  • Sapporo web
  • Sapporo service

Starting and stopping all services​

The following two scripts can be found in the installation directory.

Batch startup script for all services startall.sh

Script which stop all services at once stopall.sh

Please use these.

Starting and stopping only ImputationServer web ui​

How to start only ImputationServer web ui

cd imputation-server-ui
./start-imputation-server-ui.sh

How to stop only ImputationServer web ui

cd imputation-server-ui
./stop-imputation-server-ui.sh

Starting and stopping only the Sapporo web​

How to start only the Sapporo web

cd sapporo-web
./start-sapporo-web.sh

How to stop only the Sapporo web

cd sapporo-web
./stop-sapporo-web.sh

Starting and stopping only the Sapporo service​

How to start only the Sapporo service

cd sapporo-service
./start-sapporo-service.sh

How to stop only the Sapporo service

cd sapporo-service
./stop-sapporo-service.sh
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