| Supercomputer users in authors list (Japanese) | Supercomputer users in authors list | Title | Journal, Volume, Number, Pages | PMID | DOI |
1 | 矢野 健太郎 | Kentaro Yano | Plant Omics Data Center: an integrated web repository for interspecies gene expression networks with NLP-based curation. | Plant Cell Physiol. 2015 Jan;56(1):e9. | 25505034 | doi: 10.1093/pcp/pcu188. |
2 | 寺田 愛花, 瀬々 潤 | Aika Terada,Jun Sese | High-speed westfall-young permutation procedure for genome-wide association studies. | BCB '15: Proceedings of the 6th ACM Conference on Bioinformatics, Computational Biology and Health Informatics, September 2015 Pages 17-26 | NULL | doi.org/10.1145/2808719.2808721 |
3 | 浜田 道昭 | Michiaki Hamada | Learning chromatin states with factorized information criteria. | Bioinformatics. 2015 Aug 1;31(15):2426-33. | 25810430 | doi: 10.1093/bioinformatics/btv163. |
4 | 鈴木 穣 | Yutaka Suzuki | DB-AT: a 2015 update to the Full-parasites database brings a multitude of new transcriptomic data for apicomplexan parasites. | Nucleic Acids Res. 2015 Jan;43(Database issue):D631-6. | 25414358 | doi: 10.1093/nar/gku1240. |
5 | 二階堂 愛 | Itoshi Nikaido | MeSH ORA framework: R/Bioconductor packages to support MeSH over-representation analysis | BMC Bioinformatics. 2015 Feb 15;16:45. | 25887539 | doi: 10.1186/s12859-015-0453-z. |
6 | Adeyemi Babarinde I, 斎藤成也 | Isaac Adeyemi Babarinde,Naruya Saitou | Whole-genome sequencing of six Mauritian Cynomolgus macaques (Macaca fascicularis) reveals a genome-wide pattern of polymorphisms under extreme population bottleneck. | Genome Biol Evol. 2015 Mar 23;7(3):821-30. | 25805843 | doi: 10.1093/gbe/evv033. |
7 | 菊地 泰生 | Taisei Kikuchi | Development and validation of SSR markers for the plant-parasitic nematode Subanguina moxaeusing genome assembly of Illumina pair-end reads. | Nematology (2015) 17, p515-522 | NULL | doi:10.1163/15685411-00002885 |
8 | 菊地 泰生 | Taisei Kikuchi | Genome-wide variation in the pinewood nematode Bursaphelenchus xylophilus and its relationship with pathogenic traits. | BMC Genomics. 2015 Oct 23;16:845. | 26493074 | doi: 10.1186/s12864-015-2085-0. |
9 | 高橋 弘喜 | Hiroki Takahashi | The dynamic balance of import and export of zinc in Escherichia coli suggests a heterogeneous population response to stress. | J R Soc Interface. 2015 May 6;12(106):20150069. | 25808337 | doi: 10.1098/rsif.2015.0069. |
10 | 川舩 かおる | Kaoru Kawafune | Two different rickettsial bacteria invading Volvox carteri. | PLoS One. 2015 Feb 11;10(2):e0116192. | 25671568 | doi: 10.1371/journal.pone.0116192. |
11 | 岸田 拓士 | Takushi Kishida | Aquatic adaptation and the evolution of smell and taste in whales | Zoological Lett. 2015 Feb 13;1:9. | 26605054 | doi: 10.1186/s40851-014-0002-z. |
12 | 石井孝司 | Koji Ishii | Epidemiological and genetic analysis of a 2014 outbreak of hepatitis A in Japan. | Vaccine. 2015 Nov 9;33(45):6029-36. | 25957664 | doi: 10.1016/j.vaccine.2015.04.061. |
13 | 中川草 | So Nakagawa | Multiple invasions of an infectious retrovirus in cat genomes. | Sci Rep. 2015 Feb 2;5:8164. | 25641657 | doi: 10.1038/srep08164. |
14 | 中川草 | So Nakagawa | Simian retrovirus 4 induces lethal acute thrombocytopenia in Japanese macaques. | J Virol. 2015 Apr;89(7):3965-75. | 25609821 | doi: 10.1128/JVI.03611-14. |
15 | 加藤 毅 | Tsuyoshi Kato | Segmental HOG: new descriptor for glomerulus detection in kidney microscopy image. | BMC Bioinformatics. 2015 Sep 30;16:316. | 26423821 | doi: 10.1186/s12859-015-0739-1. |
16 | 程 朝陽 | Chaoyang Cheng | Loss of function mutations in the rice chromomethylase OsCMT3a cause a burst of transposition. | Plant J. 2015 Sep;83(6):1069-81. | 26243209 | doi: 10.1111/tpj.12952. |
17 | 前原 一満 | Kazumitsu Maehara | agplus: a rapid and flexible tool for aggregation plots | Bioinformatics. 2015 Sep 15;31(18):3046-7. | 25995229 | doi: 10.1093/bioinformatics/btv322. |
18 | 前原 一満 | Kazumitsu Maehara | Tissue-specific expression of histone H3 variants diversified after species separation | Epigenetics Chromatin. 2015 Sep 17;8:35. | 26388943 | doi: 10.1186/s13072-015-0027-3. |
19 | 前原 一満 | Kazumitsu Maehara | Incorporation of histone H3.1 suppresses the lineage potential of skeletal muscle. | Nucleic Acids Res. 2015 Jan;43(2):775-86. | 25539924 | doi: 10.1093/nar/gku1346. |
20 | 今村 拓也 | Takuya Imamura | Gene activation-associated long noncoding RNAs function in mouse preimplantation development. | Development. 2015 Mar 1;142(5):910-20. | 25633350 | doi: 10.1242/dev.116996. |
21 | 佐藤 健吾 | Kengo Sato | Resequencing of the common marmoset genome improves genome assemblies and gene-coding sequence analysis | Sci Rep. 2015 Nov 20;5:16894. | 26586576 | doi: 10.1038/srep16894. |
22 | 佐藤 行人, 山中 裕樹, 岩崎 渉 | K Sato,H Yamanaka,W Iwasaki | MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species. | R Soc Open Sci. 2015 Jul 22;2(7):150088. | 26587265 | doi: 10.1098/rsos.150088. |
23 | 近藤 伸二 | Shinji Kondo | Draft Genome Sequence of the Archiascomycetous Yeast Saitoella complicata. | Genome Announc. 2015 May 28;3(3):e00220-15. | 26021914 | doi: 10.1128/genomeA.00220-15. |
24 | 山本 泰智 | Yasunori Yamamoto | Colil: a database and search service for citation contexts in the life sciences domain | J Biomed Semantics. 2015 Oct 19;6:38. | 26500753 | doi: 10.1186/s13326-015-0037-x. |
25 | 北住 愛 | Ai Kitazumi | Implications of miR166 and miR159 induction to the basal response mechanisms of an andigena potato (Solanum tuberosum subsp. andigena) to salinity stress, predicted from network models in Arabidopsis | Genome. 2015 Jan;58(1):13-24. | 25955479 | doi: 10.1139/gen-2015-0011. |
26 | 亀田 倫史 | Tomoshi Kameda | Predicting RNA Duplex Dimerization Free-Energy Changes upon Mutations Using Molecular Dynamics Simulations | J Phys Chem Lett. 2015 Nov 5;6(21):4348-51. | 26722970 | doi: 10.1021/acs.jpclett.5b01984. |
27 | 原 雄一郎 | Yuichiro Hara | Optimizing and benchmarking de novo transcriptome sequencing: from library preparation to assembly evaluation | BMC Genomics. 2015 Nov 18;16:977. | 26581708 | doi: 10.1186/s12864-015-2007-1. |
28 | 三浦 季子 | Toshiko Miura | Diversity of Fungi on Decomposing Leaf Litter in a Sugarcane Plantation and Their Response to Tillage Practice and Bagasse Mulching: Implications for Management Effects on Litter Decomposition | Microb Ecol. 2015 Oct;70(3):646-58. | 25933637 | doi: 10.1007/s00248-015-0620-9. |
29 | 黒田 真也 | Shinya Kuroda | Glucose Homeostatic Law: Insulin Clearance Predicts the Progression of Glucose Intolerance in Humans | PLoS One. 2015 Dec 1;10(12):e0143880. | 26623647 | doi: 10.1371/journal.pone.0143880. |
30 | 遠藤 一佳 | Kazuyoshi Endo | Proteome analysis of shell matrix proteins in the brachiopod Laqueus rubellus. | Proteome Sci. 2015 Aug 15;13:21. | 26279640 | doi: 10.1186/s12953-015-0077-2. |
31 | 遠藤 明仁, 谷澤 靖洋 | Akihito Endo,Yasuhiro Tanizawa | Comparative genomics of Fructobacillus spp. and Leuconostoc spp. reveals niche-specific evolution of Fructobacillus spp. | BMC Genomics. 2015 Dec 29;16:1117. | 26715526 | doi: 10.1186/s12864-015-2339-x. |
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