| Supercomputer users in authors list (Japanese) | Supercomputer users in authors list | Title | Journal, Volume, Number, Pages | PMID | DOI |
| 1 | 小笠原 理 | Osamu Ogasawara | DDBJ progress report: a new submission system for leading to a correct annotation. | Nucleic Acids Res. 2014 Jan;42(Database issue):D44-9. | 24194602 | doi: 10.1093/nar/gkt1066 |
| 2 | 津田 勝利 | Katsutoshi Tsuda | Genome-wide study of KNOX regulatory network reveals brassinosteroid catabolic genes important for shoot meristem function in rice. | Plant Cell. 2014 Sep;26(9):3488-500. | 25194027 | doi: 10.1105/tpc.114.129122 |
| 3 | 野澤 昌文 | Masafumi Nozawa | Tissue- and stage-dependent dosage compensation on the neo-X chromosome in Drosophila pseudoobscura. | Mol Biol Evol. 2014 Mar;31(3):614-24. | 24307686 | doi: 10.1093/molbev/mst239 |
| 4 | 鈴木 穣 | Yutaka Suzuki | Interactive transcriptome analysis of malaria patients and infecting Plasmodium falciparum. | Genome Res. 2014 Sep;24(9):1433-44. | 25091627 | doi: 10.1101/gr.158980.113 |
| 5 | 赤間 悟, 瀬々 潤 | Yutaka Suzuki,Jun Sese | Genome-wide quantification of homeolog expression ratio revealed nonstochastic gene regulation in synthetic allopolyploid Arabidopsis. | Nucleic Acids Res. 2014 Apr;42(6):e46. | 24423873 | doi: 10.1093/nar/gkt1376 |
| 6 | 今村 拓也 | Takuya Imamura | Bidirectional promoters are the major source of gene activation-associated non-coding RNAs in mammals. | BMC Genomics. 2014 Jan 17;15:35. | 24438357 | doi: 10.1186/1471-2164-15-35 |
| 7 | 細道 一善, 長崎 英樹, 井ノ上 逸朗 | Kazuyoshi Hosomichi,Hideki Nagasaki,Ituro Inoue | A Bead-based Normalization for Uniform Sequencing depth (BeNUS) protocol for multi-samples sequencing exemplified by HLA-B. | BMC Genomics. 2014 Aug 4;15(1):645. | 25087472 | doi: 10.1186/1471-2164-15-645 |
| 8 | 清水 顕史 | Akifumi Shimizu | Genome-wide marker development for the wheat D genome based on single nucleotide polymorphisms identified from transcripts in the wild wheat progenitor Aegilops tauschii. | Theor Appl Genet. 2014 Feb;127(2):261-271. | 24158251 | doi: 10.1007/s00122-013-2215-5 |
| 9 | 吉武 和敏, 笠原 雅弘 | Kazutoshi Yoshitake, Masahiro Kasahara | Performance comparison of second- and third-generation sequencers using a bacterial genome with two chromosomes. | BMC Genomics. 2014 Aug 21;15(1):699. | 25142801 | doi: 10.1186/1471-2164-15-699 |
| 10 | 松井 淳 | Atsushi Matsui | Extreme expansion of the olfactory receptor gene repertoire in African elephants and evolutionary dynamics of orthologous gene groups in 13 placental mammals. | Genome Res. 2014 Sep;24(9):1485-96. | 25053675 | doi: 10.1101/gr.169532.113 |
| 11 | 阿部 貴志 | Takashi Abe | Visualization of genome signatures of eukaryote genomes by batch-learning self-organizing map with a special emphasis on Drosophila genomes. | Biomed Res Int. 2014;2014:985706. | 24741568 | doi: 10.1155/2014/985706 |
| 12 | 中川 草 | So Nakagawa | Genetic diversity of feline morbilliviruses isolated in Japan. | J Gen Virol. 2014 Jul;95(Pt 7):1464-1468. | 24728711 | doi: 10.1099/vir.0.065029-0 |
| 13 | 中川 草 | So Nakagawa | Construction of an infectious clone of simian foamy virus of Japanese macaque (SFVjm) and phylogenetic analyses of SFVjm isolates. | Gene. 2014 Sep 10;548(1):149-54. | 25017058 | doi: 10.1016/j.gene.2014.07.025 |
| 14 | 谷澤 靖洋, 遠野 雅徳 | Yasuhiro Tanizawa,Masanori Tohno | Draft Genome Sequence of Weissella oryzae SG25T, Isolated from Fermented Rice Grains. | Genome Announc. 2014 Jul 10;2(4):e00667-14. | 25013139 | doi: 10.1128/genomeA |
| 15 | 谷澤 靖洋, 遠野 雅徳 | Yasuhiro Tanizawa,Masanori Tohno | Draft Genome Sequence of Lactobacillus oryzae Strain SG293T. | Genome Announc. 2014 Aug 28;2(4):e00861-14. | 25169865 | doi: 10.1128/genomeA.00861-14 |
| 16 | 杉原 稔 | Minoru Sugihara | Dynamics of bovine opsin bound to G-protein fragments. | J Struct Biol. 2014 Oct;188(1):79-86. | 25138898 | doi: 10.1016/j.jsb.2014.08.001 |
| 17 | 岩崎 渉 | Wataru Iwasaki | MetaMetaDB: a database and analytic system for investigating microbial habitability. | PLoS One. 2014 Jan 27;9(1):e87126. | 24475242 | doi: 10.1371/journal.pone.0087126 |
| 18 | 岩崎 渉 | Wataru Iwasaki | CLOCK-controlled polyphonic regulation of circadian rhythms through canonical and noncanonical E-boxes. | Mol Cell Biol. 2014 May;34(10):1776-87. | 24591654 | doi: 10.1128/MCB.01465-13 |
| 19 | 岩崎 渉 | Wataru Iwasaki | Parallel selection on gene copy number variations through evolution of three-spined stickleback genomes. | BMC Genomics. 2014 Aug 29;15(1):735. | 25168270 | doi: 10.1186/1471-2164-15-735 |
| 20 | 尾崎 遼,岩崎 渉 | Haruka Ozaki, Wataru Iwasaki | Discovery of osmotic sensitive transcription factors in fish intestine via a transcriptomic approach. | BMC Genomics. 2014 Dec 18;15(1):1134. | 25520040 | doi: 10.1186/1471-2164-15-1134 |
| 21 | 亀田 倫史 | Tomoshi Kameda | Arginine side chains as a dispersant for individual single-wall carbon nanotubes. | Chemistry. 2014 Apr 22;20(17):4922-30. | 24711170 | doi: 10.1002/chem.201400003 |
| 22 | 亀田 倫史 | Tomoshi Kameda | Interaction of arginine with Capto MMC in multimodal chromatography. | J Chromatogr A. 2014 Apr 18;1338:58-66. | 24642397 | doi: 10.1016/j.chroma.2014.02.053 |
| 23 | 亀田 倫史 | Tomoshi Kameda | Mechanism of protein desorption from 4-mercaptoethylpyridine resins by arginine solutions. | J Chromatogr A. 2014 Dec 19;1373:141-8. | 25435461 | doi: 10.1016/j.chroma.2014.11.032 |
| 24 | 河合 洋介 | Yosuke Kawai | Evolution and diversity of the 2-oxoglutarate-dependent dioxygenase superfamily in plants. | Plant J. 2014 Apr;78(2):328-43. | 24547750 | doi: 10.1111/tpj.12479 |
| 25 | 河合 洋介 | Yosuke Kawai | Expansion of specialized metabolism-related superfamily genes via whole genome duplications during angiosperm evolution | Plant Biotechnology, 2014 Volume 31 Issue 5 Pages 579-584 | NULL | doi: 10.5511/plantbiotechnology.14.0901a |
| 26 | 前原 一満 | Kazumitsu Maehara | Heterochromatin dynamics during the differentiation process revealed by the DNA methylation reporter mouse, MethylRO. | Stem Cell Reports. 2014 Jun 3;2(6):910-24. | 2493647 | doi: 10.1016/j.stemcr.2014.05.008 |
| 27 | 前原 一満 | Kazumitsu Maehara | Regulation of RNA polymerase II activation by histone acetylation in single living cells. | Nature. 2014 Dec 11;516(7530):272-5. | 25252976 | doi: 10.1038/nature13714 |
| 28 | 飯山 和弘 | Kazuhiro Iiyama | Draft Genome Sequence of Entomopathogenic Serratia liquefaciens Strain FK01. | Genome Announc. 2014 Jun 26;2(3):e00609-14. | 24970828 | doi: 10.1128/genomeA.00609-14 |
| 29 | 門田 有希 | Yuki Monden | Efficient DNA fingerprinting based on the targeted sequencing of active retrotransposon insertion sites using a bench-top high-throughput sequencing platform. | DNA Res. 2014 Oct;21(5):491-8. | 24935865 | doi: 10.1093/dnares/dsu015 |
| 30 | 門田 有希 | Yuki Monden | Efficient screening of long terminal repeat retrotransposons that show high insertion polymorphism via high-throughput sequencing of the primer binding site. | Genome. 2014 May;57(5):245-52. | 25072847 | doi: 10.1139/gen-2014-0031 |
| 31 | 門田 有希 | Yuki Monden | Application of iPBS in high-throughput sequencing for the development of retrotransposon-based molecular markers | Current Plant Biology Volume 1, August 2014, Pages 40-44 | NULL | doi: 10.1016/j.cpb.2014.09.001 |
| 32 | 門田 有希 | Yuki Monden | 新規活性型レトロトランスポゾンTriRe-1の挿入多 型を利用したHigh-throughputなコムギ品種判定マーカーの開発 | DNA多型 = DNA polymorphism. 2014.7. vol. 22 no. 1, p.60-65 | NULL | NULL |
| 33 | 矢野 雅大 | Masahiro Yano | CLAST: CUDA implemented large-scale alignment search tool. | BMC Bioinformatics. 2014 Dec 11; | 25495907 | doi: 10.1186/s12859-014-0406-y |
| 34 | 城地 保昌 | Yasumasa Joti | Chromatin structure revealed by X-ray scattering analysis and computational modeling. | Methods. 2014 Dec;70(2-3):154-61. | 25168089 | doi: 10.1016/j.ymeth.2014.08.008 |
| 35 | 柴田 朋子 | Tomoko F Shibata | Whole-Genome Sequence of Burkholderia sp. Strain RPE67, a Bacterial Gut Symbiont of the Bean Bug Riptortus pedestris. | Genome Announc. 2014 Jun 19;2(3):e00556-14. | 24948758 | doi: 10.1128/genomeA.00556-14 |
| 36 | 千葉 啓和 | Hirokazu Chiba | Improvement of domain-level ortholog clustering by optimizing domain-specific sum-of-pairs score. | BMC Bioinformatics. 2014 May 18;15:148. | 24885064 | doi: 10.1186/1471-2105-15-148 |
| 37 | 笠原 浩太 | Kota Kasahara | A novel approach of dynamic cross correlation analysis on molecular dynamics simulations and its application to Ets1 dimer-DNA complex. | PLoS One. 2014 Nov 7;9(11):e112419. | 25380315 | doi: 10.1371/journal.pone.0112419 |
| 38 | 菊地 泰生 | Taisei Kikuchi | Distribution and evolution of glycoside hydrolase family 45 cellulases in nematodes and fungi. | BMC Evol Biol. 2014 Apr 1;14:69. | 24690293 | doi: 10.1186/1471-2148-14-69 |
| 39 | 菊地 泰生 | Taisei Kikuchi | Summarizing specific profiles in Illumina sequencing from whole-genome amplified DNA. | DNA Res. 2014 Jun;21(3):243-54. | 24353264 | doi: 10.1093/dnares/dst054 |
| 40 | 佐藤 賢二 | Kenji Satou | D-IMPACT: A Data Preprocessing Algorithm to Improve the Performance of Clustering | JSEA 2014, 7, p639-654 | NULL | doi: 10.4236/jsea.2014.78059 |
| 41 | 佐藤 賢二 | Kenji Satou | Predicting residue contacts for protein-protein interactions by integration of multiple information | JBiSE, 2014, 7, p28-37 | NULL | doi: 10.4236/jbise.2014.71005 |
| 42 | 飯田 哲史 | Tetsushi Iida | Mudi, a web tool for identifying mutations by bioinformatics analysis of whole-genome sequence. | Genes Cells. 2014 Jun;19(6):517-27. | 4766403 | doi: 10.1111/gtc.12151 |
| 43 | 飯田 哲史 | Tetsushi Iida | Population genomics of the fission yeast Schizosaccharomyces pombe. | PLoS One. 2014 Aug 11;9(8):e104241. | 2014 | 25111393 | doi: 10.1371/journal.pone.0104241 |
| 44 | 花田 耕介 | Kousuke Hanada | Phytochrome controls alternative splicing to mediate light responses in Arabidopsis. | Proc Natl Acad Sci U S A. 2014 Dec 30;111(52):18781-6. | 25512548 | doi: 10.1073/pnas.1407147112 |
| 45 | 黒田 真也 | Shinya Kuroda | Reconstruction of insulin signal flow from phosphoproteome and metabolome data. | Cell Rep. 2014 Aug 21;8(4):1171-83. | 2014 | 25131207 | doi: 10.1016/j.celrep.2014.07.021 |
| 46 | Tsai Isheng Jason, 菊地 泰生 | Isheng J Tsai, Taisei Kikuchi | Comparative genomics of Taphrina fungi causing varying degrees of tumorous deformity in plants. | Genome Biol Evol. 2014 Apr;6(4):861-72. | 24682155 | doi: 10.1093/gbe/evu067 |
| 47 | Tsai Isheng Jason | Isheng J Tsai | The genome of the sparganosis tapeworm Spirometra erinaceieuropaei isolated from the biopsy of a migrating brain lesion. | Genome Biol. 2014;15(11):510. | 25413302 | doi: 10.1186/PREACCEPT-2413673241432389 |
| 48 | Tsai Isheng Jason | Isheng J Tsai | Assessment of helminth biodiversity in wild rats using 18S rDNA based metagenomics. | PLoS One. 2014 Oct 23;9(10):e110769. | 25340824 | doi: 10.1371/journal.pone.0110769 |
| 49 | Tsai Isheng Jason | Isheng J Tsai | Whipworm genome and dual-species transcriptome analyses provide molecular insights into an intimate host-parasite interaction. | Nat Genet. 2014 Jul;46(7):693-700. | 24929830 | doi: 10.1038/ng.3010 |
| 50 | 高野 翔, 木下 乃梨子 | Sho Takano, Noriko Kinoshita | Genome-wide single nucleotide polymorphisms and insertion-deletions of Oryza sativa L. subsp. japonica cultivars grown near the northern limit of rice cultivation | Mol Breeding (2014) | NULL | doi: 10.1007/s11032-014-0093-4 |
| 51 | Kuppuraj Gopi | Gopi Kuppuraj | Conformational behavior of flavin adenine dinucleotide: conserved stereochemistry in bound and free states. | J Phys Chem B. 2014 Nov 26;118(47):13486-97. | 25389798 | doi: 10.1021/jp507629n |
| 52 | Male エドワード ウイジャヤ, 浜田 道昭 | Edward Wijaya,Michiaki Hamada | Reference-free prediction of rearrangement breakpoint reads. | Bioinformatics. 2014 Sep 15;30(18):2559-67. | 24876376 | doi: 10.1093/bioinformatics/btu360 |
| 53 | 青木 誠志郎 | Seishiro Aoki | Evolutionary dynamics of nitrogen fixation in the legume-rhizobia symbiosis. | PLoS One. 2014 Apr 1;9(4):e93670. | 24691447 | doi: 10.1371/journal.pone.0093670 |