| Supercomputer users in authors list (Japanese) | Supercomputer users in authors list | Title | Journal, Volume, Number, Pages | PMID | DOI |
| 1 | 矢野 健太郎 | Kentaro Yano | Plant Omics Data Center: an integrated web repository for interspecies gene expression networks with NLP-based curation. | Plant Cell Physiol. 2015 Jan;56(1):e9. | 25505034 | doi: 10.1093/pcp/pcu188. |
| 2 | 寺田 愛花, 瀬々 潤 | Aika Terada,Jun Sese | High-speed westfall-young permutation procedure for genome-wide association studies. | BCB '15: Proceedings of the 6th ACM Conference on Bioinformatics, Computational Biology and Health Informatics, September 2015 Pages 17-26 | NULL | doi.org/10.1145/2808719.2808721 |
| 3 | 浜田 道昭 | Michiaki Hamada | Learning chromatin states with factorized information criteria. | Bioinformatics. 2015 Aug 1;31(15):2426-33. | 25810430 | doi: 10.1093/bioinformatics/btv163. |
| 4 | 鈴木 穣 | Yutaka Suzuki | DB-AT: a 2015 update to the Full-parasites database brings a multitude of new transcriptomic data for apicomplexan parasites. | Nucleic Acids Res. 2015 Jan;43(Database issue):D631-6. | 25414358 | doi: 10.1093/nar/gku1240. |
| 5 | 二階堂 愛 | Itoshi Nikaido | MeSH ORA framework: R/Bioconductor packages to support MeSH over-representation analysis | BMC Bioinformatics. 2015 Feb 15;16:45. | 25887539 | doi: 10.1186/s12859-015-0453-z. |
| 6 | Adeyemi Babarinde I, 斎藤成也 | Isaac Adeyemi Babarinde,Naruya Saitou | Whole-genome sequencing of six Mauritian Cynomolgus macaques (Macaca fascicularis) reveals a genome-wide pattern of polymorphisms under extreme population bottleneck. | Genome Biol Evol. 2015 Mar 23;7(3):821-30. | 25805843 | doi: 10.1093/gbe/evv033. |
| 7 | 菊地 泰生 | Taisei Kikuchi | Development and validation of SSR markers for the plant-parasitic nematode Subanguina moxaeusing genome assembly of Illumina pair-end reads. | Nematology (2015) 17, p515-522 | NULL | doi:10.1163/15685411-00002885 |
| 8 | 菊地 泰生 | Taisei Kikuchi | Genome-wide variation in the pinewood nematode Bursaphelenchus xylophilus and its relationship with pathogenic traits. | BMC Genomics. 2015 Oct 23;16:845. | 26493074 | doi: 10.1186/s12864-015-2085-0. |
| 9 | 高橋 弘喜 | Hiroki Takahashi | The dynamic balance of import and export of zinc in Escherichia coli suggests a heterogeneous population response to stress. | J R Soc Interface. 2015 May 6;12(106):20150069. | 25808337 | doi: 10.1098/rsif.2015.0069. |
| 10 | 川舩 かおる | Kaoru Kawafune | Two different rickettsial bacteria invading Volvox carteri. | PLoS One. 2015 Feb 11;10(2):e0116192. | 25671568 | doi: 10.1371/journal.pone.0116192. |
| 11 | 岸田 拓士 | Takushi Kishida | Aquatic adaptation and the evolution of smell and taste in whales | Zoological Lett. 2015 Feb 13;1:9. | 26605054 | doi: 10.1186/s40851-014-0002-z. |
| 12 | 石井孝司 | Koji Ishii | Epidemiological and genetic analysis of a 2014 outbreak of hepatitis A in Japan. | Vaccine. 2015 Nov 9;33(45):6029-36. | 25957664 | doi: 10.1016/j.vaccine.2015.04.061. |
| 13 | 中川草 | So Nakagawa | Multiple invasions of an infectious retrovirus in cat genomes. | Sci Rep. 2015 Feb 2;5:8164. | 25641657 | doi: 10.1038/srep08164. |
| 14 | 中川草 | So Nakagawa | Simian retrovirus 4 induces lethal acute thrombocytopenia in Japanese macaques. | J Virol. 2015 Apr;89(7):3965-75. | 25609821 | doi: 10.1128/JVI.03611-14. |
| 15 | 加藤 毅 | Tsuyoshi Kato | Segmental HOG: new descriptor for glomerulus detection in kidney microscopy image. | BMC Bioinformatics. 2015 Sep 30;16:316. | 26423821 | doi: 10.1186/s12859-015-0739-1. |
| 16 | 程 朝陽 | Chaoyang Cheng | Loss of function mutations in the rice chromomethylase OsCMT3a cause a burst of transposition. | Plant J. 2015 Sep;83(6):1069-81. | 26243209 | doi: 10.1111/tpj.12952. |
| 17 | 前原 一満 | Kazumitsu Maehara | agplus: a rapid and flexible tool for aggregation plots | Bioinformatics. 2015 Sep 15;31(18):3046-7. | 25995229 | doi: 10.1093/bioinformatics/btv322. |
| 18 | 前原 一満 | Kazumitsu Maehara | Tissue-specific expression of histone H3 variants diversified after species separation | Epigenetics Chromatin. 2015 Sep 17;8:35. | 26388943 | doi: 10.1186/s13072-015-0027-3. |
| 19 | 前原 一満 | Kazumitsu Maehara | Incorporation of histone H3.1 suppresses the lineage potential of skeletal muscle. | Nucleic Acids Res. 2015 Jan;43(2):775-86. | 25539924 | doi: 10.1093/nar/gku1346. |
| 20 | 今村 拓也 | Takuya Imamura | Gene activation-associated long noncoding RNAs function in mouse preimplantation development. | Development. 2015 Mar 1;142(5):910-20. | 25633350 | doi: 10.1242/dev.116996. |
| 21 | 佐藤 健吾 | Kengo Sato | Resequencing of the common marmoset genome improves genome assemblies and gene-coding sequence analysis | Sci Rep. 2015 Nov 20;5:16894. | 26586576 | doi: 10.1038/srep16894. |
| 22 | 佐藤 行人, 山中 裕樹, 岩崎 渉 | K Sato,H Yamanaka,W Iwasaki | MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species. | R Soc Open Sci. 2015 Jul 22;2(7):150088. | 26587265 | doi: 10.1098/rsos.150088. |
| 23 | 近藤 伸二 | Shinji Kondo | Draft Genome Sequence of the Archiascomycetous Yeast Saitoella complicata. | Genome Announc. 2015 May 28;3(3):e00220-15. | 26021914 | doi: 10.1128/genomeA.00220-15. |
| 24 | 山本 泰智 | Yasunori Yamamoto | Colil: a database and search service for citation contexts in the life sciences domain | J Biomed Semantics. 2015 Oct 19;6:38. | 26500753 | doi: 10.1186/s13326-015-0037-x. |
| 25 | 北住 愛 | Ai Kitazumi | Implications of miR166 and miR159 induction to the basal response mechanisms of an andigena potato (Solanum tuberosum subsp. andigena) to salinity stress, predicted from network models in Arabidopsis | Genome. 2015 Jan;58(1):13-24. | 25955479 | doi: 10.1139/gen-2015-0011. |
| 26 | 亀田 倫史 | Tomoshi Kameda | Predicting RNA Duplex Dimerization Free-Energy Changes upon Mutations Using Molecular Dynamics Simulations | J Phys Chem Lett. 2015 Nov 5;6(21):4348-51. | 26722970 | doi: 10.1021/acs.jpclett.5b01984. |
| 27 | 原 雄一郎 | Yuichiro Hara | Optimizing and benchmarking de novo transcriptome sequencing: from library preparation to assembly evaluation | BMC Genomics. 2015 Nov 18;16:977. | 26581708 | doi: 10.1186/s12864-015-2007-1. |
| 28 | 三浦 季子 | Toshiko Miura | Diversity of Fungi on Decomposing Leaf Litter in a Sugarcane Plantation and Their Response to Tillage Practice and Bagasse Mulching: Implications for Management Effects on Litter Decomposition | Microb Ecol. 2015 Oct;70(3):646-58. | 25933637 | doi: 10.1007/s00248-015-0620-9. |
| 29 | 黒田 真也 | Shinya Kuroda | Glucose Homeostatic Law: Insulin Clearance Predicts the Progression of Glucose Intolerance in Humans | PLoS One. 2015 Dec 1;10(12):e0143880. | 26623647 | doi: 10.1371/journal.pone.0143880. |
| 30 | 遠藤 一佳 | Kazuyoshi Endo | Proteome analysis of shell matrix proteins in the brachiopod Laqueus rubellus. | Proteome Sci. 2015 Aug 15;13:21. | 26279640 | doi: 10.1186/s12953-015-0077-2. |
| 31 | 遠藤 明仁, 谷澤 靖洋 | Akihito Endo,Yasuhiro Tanizawa | Comparative genomics of Fructobacillus spp. and Leuconostoc spp. reveals niche-specific evolution of Fructobacillus spp. | BMC Genomics. 2015 Dec 29;16:1117. | 26715526 | doi: 10.1186/s12864-015-2339-x. |
| 32 | 谷澤 靖洋 | Yasuhiro Tanizawa | Complete genome sequence and analysis of Lactobacillus hokkaidonensis LOOC260(T), a psychrotrophic lactic acid bacterium isolated from silage. | BMC Genomics. 2015 Mar 25;16(1):240. | 25879859 | doi: 10.1186/s12864-015-1435-2. |
| 33 | 門田 有希 | Yuki Monden | Construction of a linkage map based on retrotransposon insertion polymorphisms in sweetpotato via high-throughput sequencing. | Breed Sci. 2015 Mar;65(2):145-53. | 26069444 | doi: 10.1270/jsbbs.65.145. |
| 34 | 門田 有希 | Yuki Monden | シイタケ（Lentinula edodes）におけるレトロトランスポゾン挿入多型を利用した High-Throughput な品種判定マーカーの開発. | DNA 多型 23, p34-38 (2015) | NULL | NULL |
| 35 | 溝手 朝子 | Tomoko Mizote | Identification of self-growth-inhibiting compounds lauric acid and 7-(Z)-tetradecenoic acid from Helicobacter pylori. | Microbiology (Reading). 2015 Jun;161(6):1231-9. | 25767109 | doi: 10.1099/mic.0.000077. |
| 36 | 内村 有邦 | Arikuni Uchimura | Germline mutation rates and the long-term phenotypic effects of mutation accumulation in wild-type laboratory mice and mutator mice. | Genome Res. 2015 Aug;25(8):1125-34. | 26129709 | doi: 10.1101/gr.186148.114. |
| 37 | 小埜 栄一郎 | Eiichiro Ono | The Draft Genome of Hop (Humulus lupulus), an Essence for Brewing. | Plant Cell Physiol. 2015 Mar;56(3):428-41. | 25416290 | doi: 10.1093/pcp/pcu169. |
| 38 | 松波 雅俊 | Masatoshi Matsunami | Transcriptome analysis of predator- and prey-induced phenotypic plasticity in the Hokkaido salamander (Hynobius retardatus). | Mol Ecol. 2015 Jun;24(12):3064-76. | 25943778 | doi: 10.1111/mec.13228. |
| 39 | 高橋 鉄美 | Tetsumi Takahashi | A RAD-based phylogenetics for Orestias fishes from Lake Titicaca. | Mol Phylogenet Evol. 2015 Dec;93:307-17. | 26291568 | doi: 10.1016/j.ympev.2015.08.012. |
| 40 | 韓 栄春 | Rungchun Han | Transcriptome Analysis of Nine Tissues to Discover Genes Involved in the Biosynthesis of Active Ingredients in Sophora flavescens. | Biol Pharm Bull. 2015;38(6):876-83. | 26027827 | doi: 10.1248/bpb.b14-00834. |
| 41 | 韓 栄春 | Rungchun Han | Transcriptomic landscape of Pueraria lobata demonstrates potential for phytochemical study. | Front Plant Sci. 2015 Jun 22;6:426. | 26157443 | doi: 10.3389/fpls.2015.00426. |
| 42 | 岩崎 渉 | Wataru Iwasaki | GroupTracker: Video tracking system for multiple animals under severe occlusion. | Comput Biol Chem. 2015 Aug;57:39-45. | 25736254 | doi: 10.1016/j.compbiolchem.2015.02.006. |
| 43 | 岩崎 渉 | Wataru Iwasaki | Somatic Primary piRNA Biogenesis Driven by cis-Acting RNA Elements and trans-Acting Yb. | Cell Rep. 2015 Jul 21;12(3):429-40. | 26166564 | doi: 10.1016/j.celrep.2015.06.035. |