| Supercomputer users in authors list (Japanese) | Supercomputer users in authors list | Title | Journal, Volume, Number, Pages | PMID | DOI |
1 | 浜田 道昭 | Michiaki Hamada | Training alignment parameters for arbitrary sequencers with LAST-TRAIN. | Bioinformatics. 2017 Mar 15;33(6):926-928. | 28039163 | doi: 10.1093/bioinformatics/btw742. |
2 | 福永津嵩, 浜田 道昭 | Tsukasa Fukunaga,Michiaki Hamada | RIblast: an ultrafast RNA-RNA interaction prediction system based on a seed-and-extension approach. | Bioinformatics. 2017 Sep 1;33(17):2666-2674. | 28459942 | doi: 10.1093/bioinformatics/btx287. |
3 | 菊地 泰生, Tsai Isheng Jason | Taisei Kikuchi,Isheng J Tsai | Comparative and population genomic landscape of Phellinus noxius: A hypervariable fungus causing root rot in trees. | Mol Ecol. 2017 Nov;26(22):6301-6316. | 28926153 | doi: 10.1111/mec.14359. |
4 | 斎藤 成也 | Naruya Saitou | Silencing Effect of Hominoid Highly Conserved Noncoding Sequences on Embryonic Brain Development. | Genome Biol Evol. 2017 Aug 1;9(8):2037-2048. | 28633494 | doi: 10.1093/gbe/evx105. |
5 | 安達 俊輔 | Shunsuke Adachi | Fine Mapping of Carbon Assimilation Rate 8, a Quantitative Trait Locus for Flag Leaf Nitrogen Content, Stomatal Conductance and Photosynthesis in Rice. | Front Plant Sci. 2017 Jan 31;8:60. | 28197156 | doi: 10.3389/fpls.2017.00060. |
6 | 高橋 佑磨 | Yuma Takahashi | Genome-wide population genetic analysis identifies evolutionary forces establishing continuous population divergence. | Ecological Research, Vol 32(2017), p461-468 | NULL | doi.org/10.1007/s11284-017-1459-y |
7 | 潮 雅之,佐藤 行人 | Masayuki Ushio,Yukuto Sato | Environmental DNA enables detection of terrestrial mammals from forest pond water. | Mol Ecol Resour. 2017 Nov;17(6):e63-e75. | 28603873 | doi: 10.1111/1755-0998.12690. |
8 | 岩切淳一,浜田 道昭 | Junichi Iwakiri,Michiaki Hamada | Computational prediction of lncRNA-mRNA interactionsby integrating tissue specificity in human transcriptome. | Biol Direct. 2017 Jun 8;12(1):15. | 28595592 | doi: 10.1186/s13062-017-0183-4. |
9 | 前原 一満 | Kazumitsu Maehara | Testis-Specific Histone Variant H3t Gene Is Essential for Entry into Spermatogenesis. | Cell Rep. 2017 Jan 17;18(3):593-600. | 28099840 | doi: 10.1016/j.celrep.2016.12.065. |
10 | 前原 一満 | Kazumitsu Maehara | Chd2 regulates chromatin for proper gene expression toward differentiation in mouse embryonic stem cells. | Nucleic Acids Res. 2017 Sep 6;45(15):8758-8772. | 28549158 | doi: 10.1093/nar/gkx475. |
11 | 前原 一満 | Kazumitsu Maehara | The requirement of Mettl3-promoted MyoD mRNA maintenance in proliferative myoblasts for skeletal muscle differentiation. | Open Biol. 2017 Sep;7(9):170119. | 28878038 | doi: 10.1098/rsob.170119. |
12 | 今村 拓也 | Takuya Imamura | Evolutionary acquisition of promoter-associated non-coding RNA (pancRNA) repertoires diversifies species-dependent gene activation mechanisms in mammals. | BMC Genomics. 2017 Apr 7;18(1):285. | 28388877 | doi: 10.1186/s12864-017-3662-1 |
13 | 今村 拓也 | Takuya Imamura | DNA Methylome Analysis Identifies Transcription Factor-Based Epigenomic Signatures of Multilineage Competence in Neural Stem/Progenitor Cells. | Cell Rep. 2017 Sep 19;20(12):2992-3003. | 28930691 | doi: 10.1016/j.celrep.2017.08.086. |
14 | 本郷悠貴 | Yuki Hongo | Identification of Genes for Synthesis of the Blue Pigment, Biliverdin IXα, in the Blue Coral Heliopora coerulea. | Biol Bull. 2017 Apr;232(2):71-81. | 28654333 | doi: 10.1086/692661. |
15 | 北野載 | Hajime Kitano | Two vitellogenins in the loliginid squid Uroteuthis edulis: Identification and specific expression in ovarian follicles. | Mol Reprod Dev. 2017 May;84(5):363-375. | 28218427 | doi: 10.1002/mrd.22786 |
16 | 神沼 英里, 望月孝子 | Takako Mochizuki,Eli Kaminuma | DNApod: DNA polymorphism annotation database from next-generation sequence read archives. | PLoS One. 2017 Feb 24;12(2):e0172269. | 28234924 | doi: 10.1371/journal.pone.0172269. |
17 | 坊農秀雅 | Hidemasa Bono | HIF-1-mediated suppression of mitochondria electron transport chain function confers resistance to lidocaine-induced cell death. | Sci Rep. 2017 Jun 19;7(1):3816. | 28630416 | doi: 10.1038/s41598-017-03980-7. |
18 | 坊農秀雅 | Hidemasa Bono | Identification of functional enolase genes of the silkworm Bombyx mori from public databases with a combination of dry and wet bench processes. | BMC Genomics. 2017 Jan 13; | 28086791 | doi: 10.1186/s12864-016-3455-y. |
19 | 坊農秀雅 | Hidemasa Bono | RefEx, a reference gene expression dataset as a web tool for the functional analysis of genes. | Sci Data. 2017 Aug 29;4:170105. | 28850115 | doi: 10.1038/sdata.2017.105. |
20 | 平木秀明 | Hideaki Hiraki | Genome analysis of Diploscapter coronatus: insights into molecular peculiarities of a nematode with parthenogenetic reproduction. | BMC Genomics. 2017 Jun 24;18(1):478. | 28646875 | doi: 10.1186/s12864-017-3860-x. |
21 | 平尾章 | Akira S. Hirao | Cost-Effective Discovery of Nucleotide Polymorphisms in Populations of an Allopolyploid Species Using Pool-Seq. American Journal of Molecular Biology Vol.7 No.4, October 2017, PP. 1031-1046 | American Journal of Molecular Biology, 2017, 7, 153-168 | NULL | doi: 10.4236/ajmb.2017.74012. |
22 | 福島健児, 笠原 雅弘 | Kenji Fukushima,Masahiro Kasahara | Genome of the pitcher plant Cephalotus reveals genetic changes associated with carnivory. | Nat Ecol Evol. 2017 Feb 6;1(3):59. | 28812732 | doi: 10.1038/s41559-016-0059. |
23 | 福永津嵩 | Tsukasa Fukunaga,Michiaki Hamada | Inactivity periods and postural change speed can explain atypical postural change patterns of Caenorhabditis elegans mutants. | BMC Bioinformatics. 2017 Jan 19;18(1):46. | 28103804 | doi: 10.1186/s12859-016-1408-8. |
24 | 中川 草, 上田 真保子 | Mahoko Takahashi Ueda,So Nakagawa | Functional mutations in spike glycoprotein of Zaire ebolavirus associated with an increase in infection efficiency | Genes Cells. 2017 Feb;22(2):148-159. | 28084671 | doi: 10.1111/gtc.12463 |
25 | 中川 草 | So Nakagawa | Comparative genomic analysis of translation initiation mechanisms for genes lacking the Shine-Dalgarno sequence in prokaryotes. | Nucleic Acids Res. 2017 Apr 20;45(7):3922-3931. | 28334743 | doi: 10.1093/nar/gkx124. |
26 | 尾崎 遼, 岩崎 渉 | Haruka Ozaki,Wataru Iwasaki | ADARB1 catalyzes circadian A-to-I editing and regulates RNA rhythm. | Nat Genet. 2017 Jan;49(1):146-151. | 27893733 | doi: 10.1038/ng.3731. |
27 | 飯山 和弘 | Kazuhiro Iiyama | A reconsideration of the taxonomic position of two bacterial strains isolated from acherie-diseased silkworms in 1965. J Insect Biotechnol Sericology 86(2017) p35-41 | 2017 Volume 86 Issue 2 Pages 2_035-2_041 | NULL | doi.org/10.11416/jibs.86.2_035 |
28 | Mark Ravinet | Mark Ravinet | Different contributions of local- and distant-regulatory changes to transcriptome divergence between stickleback ecotypes. | Evolution. 2017 Mar;71(3):565-581. | 28075479 | doi: 10.1111/evo.13175. |
29 | Mark Ravinet | Mark Ravinet | Genetic basis for variation in salinity tolerance between stickleback ecotypes. | Mol Ecol. 2017 Jan;26(1):304-319. | 27706866 | doi: 10.1111/mec.13875. |
30 | 門田 有希 | Yuki Monden | 外国産コムギ品種を識別する技術の開発 | DNA多型 25, p68-71 (2017). | NULL | NULL |
31 | 大田 達郎 | Tazro Ohta | Calculating the quality of public high-throughput sequencing data to obtain a suitable subset for reanalysis from the Sequence Read Archive. | Gigascience. 2017 Jun 1;6(6):1-8. | 28449062 | doi: 10.1093/gigascience/gix029. |
32 | 井ノ上逸朗 | Ituro Inoue | Systematic identification and characterization of regulatory elements derived from human endogenous retroviruses. | PLoS Genet. 2017 Jul 12;13(7):e1006883. | 28700586 | doi: 10.1371/journal.pgen.1006883. |
33 | 谷澤 靖洋 | Yasuhiro Tanizawa | Genomic characterization reconfirms the taxonomic status of Lactobacillus parakefiri. | Biosci Microbiota Food Health. 2017;36(3):129-134. | 28748134 | doi: 10.12938/bmfh.16-026. |
34 | 亀田 倫史 | Tomoshi Kameda | A study of the small-molecule system used to investigate the effect of arginine on antibody elution in hydrophobic charge-induction chromatography. | Protein Expr Purif. 2017 Jan;129:44-52. | 27623150 | doi: 10.1016/j.pep.2016.09.004. |
35 | 笠原 浩太 | Kota Kasahara | Molecular mechanisms of cooperative binding of transcription factors Runx1-CBFβ-Ets1 on the TCRα gene enhancer. | PLoS One. 2017 Feb 23;12(2):e0172654. | 28231333 | doi: 10.1371/journal.pone.0172654. |
36 | 工藤 徹 | Toru Kudo | PlantExpress: A Database Integrating OryzaExpress and ArthaExpress for Single-species and Cross-species Gene Expression Network Analyses with Microarray-Based Transcriptome Data. | Plant Cell Physiol. 2017 Jan 1;58(1):e1. | 28158643 | doi: 10.1093/pcp/pcw208. |
37 | 工藤 徹, 大柳 一,矢野 健太郎 | Toru Kudo,Hajime Ohyanagi,Kentaro Yano | TOMATOMICS: A Web Database for Integrated Omics Information in Tomato. | Plant Cell Physiol. 2017 Jan 1;58(1):e8. | 28111364 | doi: 10.1093/pcp/pcw207. |
38 | 小林 正明,矢野 健太郎 | Masaaki Kobayashi,Kentaro Yano | Heap: a highly sensitive and accurate SNP detection tool for low-coverage high-throughput sequencing data. | DNA Res. 2017 Aug 1;24(4):397-405. | 28498906 | doi: 10.1093/dnares/dsx012. |
39 | 佐藤 行人 | Yukuto Sato | Environmental DNA metabarcoding reveals local fish communities in a species-rich coastal sea. | Sci Rep. 2017 Jan 12;7:40368. | 28079122 | doi: 10.1038/srep40368. |
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