| Supercomputer users in authors list(Japanese) | Supercomputer users in authors list | Title | Journal, Volume, Number, Pages | PMID | DOI |
| 1 | 墨谷 暢子 | Nobuko Sumiya | Coordination mechanism of cell and cyanelle division in the glaucophyte alga Cyanophora sudae | Protoplasma. 2022 Jul;259(4):855-867. | 34553240 | doi: 10.1007/s00709-021-01704-3 |
| 2 | 佐藤 健吾 | Kengo Sato | Prediction of RNA secondary structure including pseudoknots for long sequences | Briefings in bioinformatics. 2022 Jan 17;23(1):bbab395. | 34601552 | doi: 10.1093/bib/bbab395 |
| 3 | 竹中 康浩 | Yasuhiro Takenaka | Prolonged disturbance of proteostasis induces cellular senescence via temporal mitochondrial dysfunction and subsequent mitochondrial accumulation in human fibroblasts | The FEBS journal. 2022 Mar;289(6):1650-1667. | 34689411 | doi: 10.1111/febs.16249 |
| 4 | Yassouf Mhd Yousuf | Mhd Yousuf Yassouf | Biphasic effect of mechanical stress on lymphocyte activation | Journal of cellular physiology. 2022 Feb;237(2):1521-1531. | 34724217 | doi: 10.1002/jcp.30623 |
| 5 | イワサキ タケシ | Takeshi Iwasaki | Merkel cell polyomavirus-negative Merkel cell carcinoma is associated with JAK-STAT and MEK-ERK pathway activation. | Cancer Sci. 2022 Jan; 113(1): 251-260. | 34724284 | doi: 1111/cas.15187 |
| 6 | 小笠原 理 | Ogasawara Osamu | DNA Data Bank of Japan (DDBJ) update report 2021. | Nucleic Acids Res. 2022 Jan 07; 50(D1): D102-D105. | 34751405 | doi: 1093/nar/gkab995 |
| 7 | 高田 豊行, 近藤 伸二 | Toyoyuki Takada, Shinji Kondo | MoG+: a database of genomic variations across three mouse subspecies for biomedical research | Mammalian genome : official journal of the International Mammalian Genome Society. 2022 Mar;33(1):31-43. | 34782917 | doi: 10.1007/s00335-021-09933-w |
| 8 | 小野 肇 | Hajime Ono | Functional characterization of an olfactory receptor in the Oriental fruit fly, Bactrocera dorsalis, that responds to eugenol and isoeugenol | Comparative biochemistry and physiology. Part B, Biochemistry & molecular biology. 2022 Feb-Mar;258:110696. | 34800681 | doi: 10.1016/j.cbpb.2021.110696 |
| 9 | 伊達 悠貴 | Yuki Date | Runx3 is required for oncogenic Myc upregulation in p53-deficient osteosarcoma. | Oncogene. 2022 Jan; 41(5): 683-691. | 34803166 | doi: 1038/s41388-021-02120-w |
| 10 | 市原 知哉 | kazuya ichihara | Identification and characterization of novel proteins associated with CHD4. | Genes Cells. 2022 Jan; 27(1): 61-71. | 34897913 | doi: 1111/gtc.12909 |
| 11 | 加藤 裕之 | Hiroyuki Kato | MNX1-HNF1B axis is ihttps://pubmed.ncbi.nlm.nih.gov/34953915/ndispensable for intraductal papillary mucinous neoplasm lineages | Gastroenterology. 2022 Apr;162(4):1272-1287.e16. | 34953915 | doi: 10.1053/j.gastro.2021.12.254 |
| 12 | 中川 草 | So Nakagawa | The SARS-CoV-2 Lambda variant exhibits enhanced infectivity and immune resistance | Cell reports. 2022 Jan 11;38(2):110218. | 34968415 | doi: 10.1016/j.celrep.2021.110218 |
| 13 | 今野 直輝 | Naoki Konno | Deep distributed computing to reconstruct extremely large lineage trees. | Nature biotechnology. 2022 Apr;40(4):566-575. | 34992246 | doi: 10.1038/s41587-021-01111-2 |
| 14 | 阿部 陽 | Akira Abe | Recombinant inbred lines and next-generation sequencing enable rapid identification of candidate genes involved in morphological and agronomic traits in foxtail millet. | Sci Rep. 2022 Jan 07; 12(1): 218. | 34997038 | doi: 1038/s41598-021-04012-1 |
| 15 | 川上 聖司 | Satoshi Kawakami | mTOR-AKT Signaling in Cellular Clock Resetting Triggered by Osmotic Stress. | Antioxid Redox Signal. 2022 Oct; 37(10-12): 631-646. | 35018792 | doi: 1089/ars.2021.0059 |
| 16 | 松波 雅俊 | Masatoshi Matsunami | Genomic and transcriptomic analyses of the subterranean termite Reticulitermes speratus: gene duplication facilitates social evolution | Proceedings of the National Academy of Sciences of the United States of America. 2022 Jan 18;119(3):e2110361119. | 35042774 | doi: 10.1073/pnas.2110361119 |
| 17 | 福永 津嵩 | Tsukasa Fukunaga | Inverse Potts model improves accuracy of phylogenetic profiling | Bioinformatics (Oxford, England). 2022 Jan 21;38(7):1794-1800. | 35060594 | doi: 10.1093/bioinformatics/btac034 |
| 18 | 鄒 兆南, 沖 真弥 | Zhaonan Zou, Shinya Oki | Epigenetic landscape of drug responses revealed through large-scale ChIP-seq data analyses | BMC bioinformatics. 2022 Jan 24;23(1):51. | 35073843 | doi: 10.1186/s12859-022-04571-8 |
| 19 | 石井 悠, 丸山 真一朗 | Yuu Ishii, Shinichiro Maruyama | Gene expression alterations from reversible to irreversible stages during coral metamorphosis | Zoological letters. 2022 Jan 25;8(1):4. | 35078542 | doi: 10.1186/s40851-022-00187-1 |
| 20 | 前野 慎太朗 | Shintaro Maeno | 16S rRNA gene sequence diversity in Faecalibacterium prausnitzii-complex taxa has marked impacts on quantitative analysis. | FEMS Microbiol Ecol. 2022 Feb 10; 98(1): fiac004. | 35090008 | doi: 1093/femsec/fiac004 |
| 21 | 仮屋園 遼 | Ryo Kariyazono | Identification of genome-wide distribution of cyanobacterial group 2 sigma factor SigE accountable for its regulon | The Plant journal : for cell and molecular biology. 2022 Apr;110(2):548-561. | 35092706 | doi: 10.1111/tpj.15687 |
| 22 | 川島 武士, 吉田 真明, 濱田 麻友子 | Takeshi Kawashima, Masa-Aki Yoshida, Mayuko Hamada | Observing Phylum-Level Metazoan Diversity by Environmental DNA Analysis at the Ushimado Area in the Seto Inland Sea | Zoological science. 2022 Feb;39(1):157-165. | 35107003 | doi: 10.2108/zs210073 |
| 23 | 武藤 吉徳 | Yoshinori Muto | Complete Genome Sequences of Three Phocaeicola vulgatus Strains Isolated from a Healthy Japanese Individual | Microbiology resource announcements. 2022 Feb 17;11(2):e0112421. | 35112912 | doi: 10.1128/mra.01124-21 |
| 24 | 伊達 悠貴 | Yuki Date | Oncogenic Runx1-Myc axis in p53-deficient thymic lymphoma. | Gene. 2022 Apr 20; 819: 146234. | 35114276 | doi: 1016/j.gene.2022.146234 |
| 25 | 松波 雅俊 | Masatoshi Matsunami | Gene Structure Analysis of Chemokines and Their Receptors in Allotetraploid Frog, Xenopus laevis | Frontiers in genetics. 2022 Jan 20;12:787979. | 35126458 | doi: 10.3389/fgene.2021.787979 |
| 26 | 茂木 朋貴 | Tomoki Motegi | Anti-CCR4 treatment depletes regulatory T cells and leads to clinical activity in a canine model of advanced prostate cancer | Journal for immunotherapy of cancer. 2022 Feb;10(2):e003731. | 35131860 | doi: 10.1136/jitc-2021-003731 |
| 27 | 佐久間 敦丈 | Atsuhiro Sakuma | A transcriptomic reevaluation of the accessory olfactory organ in Bichir (Polypterus senegalus) | Zoological letters. 2022 Feb 8;8(1):5. | 35135614 | doi: 10.1186/s40851-022-00189-z |
| 28 | 茂木 朋貴 | Tomoki Motegi | Dystrophin-deficient muscular dystrophy in a Toy Poodle with a single base pair insertion in exon 45 of the Duchenne muscular dystrophy gene | The Journal of veterinary medical science. 2022 Apr 13;84(4):502-506. | 35135937 | doi: 10.1292/jvms.21-0504 |
| 29 | 藤井 雅史 | Masashi Fujii | Four features of temporal patterns characterize similarity among individuals and molecules by glucose ingestion in humans | NPJ systems biology and applications. 2022 Feb 8;8(1):6. | 35136093 | doi: 10.1038/s41540-022-00213-0 |
| 30 | 五味 良太 | Ryota Gomi | Emergence of rare carbapenemases (FRI, GES-5, IMI, SFC and SFH-1) in Enterobacterales isolated from surface waters in Japan | The Journal of antimicrobial chemotherapy. 2022 Apr 27;77(5):1237-1246. | 35137119 | doi: 10.1093/jac/dkac029 |
| 31 | 小木曽 映里 | Eri Ogiso-Tanaka | De Novo Genome Assembly of Stinkhorn Mushroom Clathrus columnatus (Basidiomycota, Fungi) Using Illumina and Nanopore Sequencing Data | Microbiology resource announcements. 2022 Feb 17;11(2):e0102621. | 35142541 | doi: 10.1128/mra.01026-21 |
| 32 | 坂山 英俊 | Hidetoshi Sakayama | Discovery of ultrafast myosin, its amino acid sequence, and structural features | Proceedings of the National Academy of Sciences of the United States of America. 2022 Feb 22;119(8):e2120962119. | 35173046 | doi: 10.1073/pnas.2120962119 |
| 33 | 新里 宙也 | Chuya Shinzato | Larval transcriptomic responses of a stony coral, Acropora tenuis, during initial contact with the native symbiont, Symbiodinium microadriaticum | Sci Rep. 2022 Feb 21;12(1):2854. | 35190599 | doi: 10.1038/s41598-022-06822-3 |
| 34 | 有泉 亨 | Tohru Ariizumi | orf137 triggers cytoplasmic male sterility in tomato. | Plant Physiol. 2022 Jun 01; 189(2): 465-468. | 35212743 | doi: 1093/plphys/kiac082 |
| 35 | 黒田 真也 | Shinya Kuroda | Multi-omics-based label-free metabolic flux inference reveals obesity-associated dysregulatory mechanisms in liver glucose metabolism. | iScience. 2022 Feb 4;25(2):103787. | 35243212 | doi: 10.1016/j.isci.2022.103787 |
| 36 | 小林 光智衣 | Michie Kobayashi | A jacalin-like lectin domain-containing protein of Sclerospora graminicola acts as an apoplastic virulence effector in plant-oomycete interactions | Molecular plant pathology. 2022 Jun;23(6):845-854. | 35257477 | doi: 10.1111/mpp.13197 |
| 37 | 石下 聡, 郷 康広 | Satoshi Ishishita, Yasuhiro Go | Uterus-specific transcriptional regulation underlies eggshell pigment production in Japanese quail | PloS one. 2022 Mar 10;17(3):e0265008. | 35271636 | doi: 10.1371/journal.pone.0265008 |
| 38 | 茂木 朋貴 | Tomoki Motegi | mRNA sequencing analysis and growth inhibitory effects of palbociclib on cell lines from canine histiocytic proliferative disorders. | Vet Comp Oncol. 2022 Sep; 20(3): 587-601. | 35278028 | doi: 1111/vco.12812 |
| 39 | 高木 亙 | Wataru Takagi | Molecular mechanism of nutrient uptake in developing embryos of oviparous cloudy catshark (Scyliorhinus torazame) | PloS one. 2022 Mar 15;17(3):e0265428. | 35290397 | doi: 10.1371/journal.pone.0265428 |
| 40 | 吉田 真明 | Masa-Aki Yoshida | Gut microbiota analysis of Blenniidae fishes including an algae-eating fish and clear boundary formation among isolated Vibrio strains | Scientific reports. 2022 Mar 17;12(1):4642. | 35301363 | doi: 10.1038/s41598-022-08511-7 |
| 41 | 笠井 淳司, 田沼 将人, 笠井 淳司, 奥野 浩行 | Atsushi Kasai, Masato Tanuma, Atsushi Kasai, Hiroyuki Okuno | Claustrum mediates bidirectional and reversible control of stress-induced anxiety responses | Science advances. 2022 Mar 18;8(11):eabi6375. | 35302853 | doi: 10.1126/sciadv.abi6375 |
| 42 | 比嘉 綱己 | Tsunaki Higa | Spatiotemporal reprogramming of differentiated cells underlies regeneration and neoplasia in the intestinal epithelium | Nature communications. 2022 Mar 21;13(1):1500. | 35314700 | doi: 10.1038/s41467-022-29165-z |
| 43 | 村上 匠, 瀬川 高弘 | Takumi Murakami, Takahiro Segawa | Metagenomics reveals global-scale contrasts in nitrogen cycling and cyanobacterial light harvesting mechanisms in glacier cryoconite | Microbiome. 2022 Mar 23;10(1):50. | 35317857 | doi: 10.1186/s40168-022-01238-7 |
| 44 | 阿部 陽 | Akira Abe | High-performance pipeline for MutMap and QTL-seq. | PeerJ. 2022; 10: e13170. | 35321412 | doi: 7717/peerj.13170 |
| 45 | 森 宣仁 | Nobuhito Mori | Potential Metabolite Markers for Pancreatic Cancer Identified by Metabolomic Analysis of Induced Cancer-Associated Fibroblasts | Cancers. 2022 Mar 8;14(6):1375. | 35326527 | doi: 10.3390/cancers14061375 |
| 46 | 田路 矩之, 郷 康広 | Noriyuki Toji, Yasuhiro Go | Nicotinic acetylcholine receptors in a songbird brain. | J Comp Neurol. 2022 Aug; 530(11): 1966-1991. | 35344610 | doi: 1002/cne.25314 |
| 47 | 市村 和也 | Kazuya Ichimura | Simultaneous mutations in SMN1 and SUMM2 fully suppress the dwarf and autoimmune phenotypes of Arabidopsis mpk4 mutant. | Plant Signal Behav. 2022 Dec 31; 17(1): 2046412. | 35350957 | doi: 1080/15592324.2022.2046412 |
| 48 | 火原 日美子 | Himiko Hibara | ATTED-II v11: A Plant Gene Coexpression Database Using a Sample Balancing Technique by Subagging of Principal Components. | Plant Cell Physiol. 2022 Jun 15; 63(6): 869-881. | 35353884 | doi: 1093/pcp/pcac041 |
| 49 | 吉田 光範 | Mitsunori Yoshida | Complete Genome Sequence of Mycobacterium fortuitum subsp. fortuitum JCM 6387, a Type Strain of Human-Pathogenic Mycobacteria Showing Inducible Macrolide Resistance | Microbiology resource announcements. 2022 Apr 21;11(4):e0006022. | 35357161 | doi: 10.1128/mra.00060-22 |
| 50 | 佐藤 行人 | Yukuto Sato | Analysis of human clinical and environmental Leptospira to elucidate the eco-epidemiology of leptospirosis in Yaeyama, subtropical Japan. | PLoS Negl Trop Dis. 2022 Mar; 16(3): e0010234. | 35358181 | doi: 1371/journal.pntd.0010234 |
| 51 | 笠原 雅弘 | Masahiro Kasahara | LPMX: A pure rootless composable container system | BMC bioinformatics. 2022 Mar 31;23(1):112. | 35361130 | doi: 10.1186/s12859-022-04649-3 |
| 52 | 瀧 雄介 | Yusuke Taki | The Association Between Onset of Staphylococcal Non-menstrual Toxic Shock Syndrome With Inducibility of Toxic Shock Syndrome Toxin-1 Production | Frontiers in microbiology. 2022 Mar 14;13:765317. | 35369432 | doi: 10.3389/fmicb.2022.765317 |
| 53 | 吉武 和敏 | Kazutoshi Yoshitake | Construction of a chromosome-level Japanese stickleback species genome using ultra-dense linkage analysis with single-cell sperm sequencing. | NAR Genom Bioinform. 2022 Jun; 4(2): lqac026. | 35372836 | doi: 1093/nargab/lqac026 |
| 54 | 西井 かなえ | kanae nishii | The first genome for the Cape Primrose Streptocarpus rexii (Gesneriaceae), a model plant for studying meristem-driven shoot diversity. | Plant Direct. 2022 Apr; 6(4): e388. | 35388373 | doi: 1002/pld3.388 |
| 55 | 寺井 悟朗 | Goro Terai | QRNAstruct: a method for extracting secondary structural features of RNA via regression with biological activity. | Nucleic Acids Res. 2022 Jul 22; 50(13): e73. | 35390152 | doi: 1093/nar/gkac220 |
| 56 | 原 敏文 | Toshifumi Hara | Elevated METTL9 is associated with peritoneal dissemination in human scirrhous gastric cancers. | Biochem Biophys Rep. 2022 Jul; 30: 101255. | 35402738 | doi: 1016/j.bbrep.2022.101255 |
| 57 | 河口 真一 | Shinichi Kawaguchi | The Tudor Domain-Containing Protein, Kotsubu (CG9925), Localizes to the Nuage and Functions in piRNA Biogenesis in D. melanogaster. | Front Mol Biosci. 2022; 9: 818302. | 35425810 | doi: 3389/fmolb.2022.818302 |
| 58 | 吉田 光範 | Mitsunori Yoshida | Molecular Epidemiological Characteristics of Mycobacterium abscessus Complex Derived from Non-Cystic Fibrosis Patients in Japan and Taiwan | Microbiology spectrum. 2022 Jun 29;10(3):e0057122. | 35446117 | doi: 10.1128/spectrum.00571-22 |
| 59 | 湯山 育子 | Ikuko Yuyama | Metatranscriptomic Analysis of Corals Inoculated With Tolerant and Non-Tolerant Symbiont Exposed to High Temperature and Light Stress. | Front Physiol. 2022; 13: 806171. | 35480050 | doi: 3389/fphys.2022.806171 |
| 60 | 奥野 友介 | Yusuke Okuno | EBV genome variations enhance clinicopathological features of nasopharyngeal carcinoma in a non-endemic region. | Cancer Sci. 2022 Jul; 113(7): 2446-2456. | 35485636 | doi: 1111/cas.15381 |
| 61 | 谷澤 靖洋 | Yasuhiro Tanizawa | Genome evolution of a nonparasitic secondary heterotroph, the diatom Nitzschia putrida. | Sci Adv. 2022 Apr 29; 8(17): eabi5075. | 35486731 | doi: 1126/sciadv.abi5075 |
| 62 | 大槻 朝 | Hajime Ohtsuki | Invasions of an obligate asexual daphnid species support the nearly neutral theory. | Sci Rep. 2022 May 04; 12(1): 7305. | 35508526 | doi: 1038/s41598-022-11218-4 |
| 63 | 岡田 俊平 | Shunpei Okadas | Regulation of A-to-I RNA editing and stop codon recoding to control selenoprotein expression during skeletal myogenesis. | Nat Commun. 2022 May 06; 13(1): 2503. | 35523818 | doi: 1038/s41467-022-30181-2 |
| 64 | 中岡 慎治 | Shinji Nakaoka | Evolving neural networks through bio-inspired parent selection in dynamic environments. | Biosystems. 2022 Aug; 218: 104686. | 35525435 | doi: 1016/j.biosystems.2022.104686 |
| 65 | 笠原 浩太 | Kota Kasahara | Information quantity for secondary structure propensities of protein subsequences in the Protein Data Bank | Biophysics and physicobiology. 2022 Feb 8;19:1-12. | 35532457 | doi: 10.2142/biophysico.bppb-v19.0002 |
| 66 | 水口 洋平, 豊田 敦 | Yohei Minakuchi, Atsushi Toyoda | Early embryonic mutations reveal dynamics of somatic and germ cell lineages in mice. | Genome Res. 2022 May; 32(5): 945-955. | 35534232 | doi: 1101/gr.276363.121 |
| 67 | 遠藤 明仁 | Akihito Endo | Extracellular fructooligosaccharide degradation in Anaerostipes hadrus for co-metabolism with non-fructooligosaccharide utilizers. | Biochem Biophys Res Commun. 2022 Jul 12; 613: 81-86. | 35537289 | doi: 1016/j.bbrc.2022.04.134 |
| 68 | 森 宙史, 西原 秀典 | Hiroshi Mori, Hidenori Nishihara | Paleogenomics reveals independent and hybrid origins of two morphologically distinct wolf lineages endemic to Japan. | Curr Biol. 2022 Jun 06; 32(11): 2494-2504.e5. | 35537455 | doi: 1016/j.cub.2022.04.034 |
| 69 | 井関 洸太朗 | kohtaro iseki | Variability of Flowering Sex and Its Effect on Agronomic Trait Expression in White Guinea Yam. | Front Plant Sci. 2022; 13: 837951. | 35548274 | doi: 3389/fpls.2022.837951 |
| 70 | 秋山 泰身 | Taishin Akiyama | Integrative analysis of scRNA-seq and scATAC-seq revealed transit-amplifying thymic epithelial cells expressing autoimmune regulator. | Elife. 2022 May 17; 11: e73998. | 35578835 | doi: 7554/eLife.73998 |
| 71 | 加藤 大明 | Hiroaki Kato | Recognition of pathogen-derived sphingolipids in Arabidopsis. | Science. 2022 May 20; 376(6595): 857-860. | 35587979 | doi: 1126/science.abn0650 |
| 72 | 齋藤 裕 | Yutaka Saito | AI and computational chemistry-accelerated development of an alotaketal analogue with conventional PKC selectivity. | Chem Commun (Camb). 2022 Jun 09; 58(47): 6693-6696. | 35608215 | doi: 1039/d2cc01759h |
| 73 | 新里 宙也 | Chuya Shinzato | Comparative genomics highlight the importance of lineage-specific gene families in evolutionary divergence of the coral genus, Montipora. | BMC Ecol Evol. 2022 May 27; 22(1): 71. | 35624412 | doi: 1186/s12862-022-02023-8 |
| 74 | 張 再軍 | Zaijun Zhang | Temporal and Locational Values of Images Affecting the Deep Learning of Cancer Stem Cell Morphology. | Biomedicines. 2022 Apr 19; 10(5): 941. | 35625678 | doi: 3390/biomedicines10050941 |
| 75 | 石川 麻乃 | Asano Ishikawa | Convergent copy number increase of genes associated with freshwater colonization in fishes | Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 2022 Jul 18;377(1855):20200509. | 35634928 | doi: 10.1098/rstb.2020.0509 |
| 76 | 川瀬 雅貴, 一柳 健司 | Masaki Kawase, Kenji Ichiyanagi | The Expression Dynamics of piRNAs Derived From Male Germline piRNA Clusters and Retrotransposons. | Front Cell Dev Biol. 2022; 10: 868746. | 35646920 | doi: 3389/fcell.2022.868746 |
| 77 | 山本 泰智 | Yamamoto Yasunori | Online tools for efficient paper writing. | Hum Genome Var. 2022 Jun 06; 9(1): 20. | 35668068 | doi: 1038/s41439-022-00195-9 |
| 78 | 押木 守 | mamoru oshiki | Growth of nitrite-oxidizing Nitrospira and ammonia-oxidizing Nitrosomonas in marine recirculating trickling biofilter reactors. | Environ Microbiol. 2022 Aug; 24(8): 3735-3750. | 35672869 | doi: 1111/1462-2920.16085 |
| 79 | 山本 容正 | Yoshimasa Yamamoto | Fusion plasmid carrying the colistin resistance gene mcr of Escherichia coli isolated from healthy residents. | J Glob Antimicrob Resist. 2022 Sep; 30: 152-154. | 35705132 | doi: 1016/j.jgar.2022.06.007 |
| 80 | 鴻巣 明日香 | Asuka Kounosu | piRNA-like small RNAs target transposable elements in a Clade IV parasitic nematode. | Sci Rep. 2022 Jun 16; 12(1): 10156. | 35710810 | doi: 1038/s41598-022-14247-1 |
| 81 | 佐藤 賢二 | Kenji Satou | ProtTrans-Glutar: Incorporating Features From Pre-trained Transformer-Based Models for Predicting Glutarylation Sites. | Front Genet. 2022; 13: 885929. | 35711929 | doi: 3389/fgene.2022.885929 |
| 82 | 近藤 伸二 | Shinji Kondo | Nintedanib induces gene expression changes in the lung of induced-rheumatoid arthritis-associated interstitial lung disease mice. | PLoS One. 2022; 17(6): e0270056. | 35714115 | doi: 1371/journal.pone.0270056 |
| 83 | 藤井 雅史, 菊池 裕 | Masashi Fujii, Yutaka Kikuchi | Identification of aberrant transcription termination at specific gene loci with DNA hypomethylated transcription termination sites caused by DNA methyltransferase deficiency. | Genes Genet Syst. 2022 Oct 18; 97(3): 139-152. | 35718462 | doi: 1266/ggs.21-00092 |
| 84 | 塚本 雄也 | Yuta Tsukamoto | Mineralogical and Genomic Constraints on the Origin of Microbial Mn Oxide Formation in Complexed Microbial Community at the Terrestrial Hot Spring. | Life (Basel). 2022 May 30; 12(6): 816. | 35743847 | doi: 3390/life12060816 |
| 85 | 川崎 純菜 | Junna Kawasaki | Convergent evolution of antiviral machinery derived from endogenous retrovirus truncated envelope genes in multiple species. | Proc Natl Acad Sci U S A. 2022 Jun 28; 119(26): e2114441119. | 35749360 | doi: 1073/pnas.2114441119 |
| 86 | 藤井 雅史 | Masashi Fujii | Mathematical model of chromosomal dynamics during DNA double strand break repair in budding yeast. | Biophys Physicobiol. 2022; 19: 1-12. | 35749629 | doi: 2142/biophysico.bppb-v19.0012 |
| 87 | 吉田 圭佑 | Keisuke Yoshida | Priority effects shape the structure of infant-type Bifidobacterium communities on human milk oligosaccharides. | ISME J. 2022 Sep; 16(9): 2265-2279. | 35768643 | doi: 1038/s41396-022-01270-3 |
| 88 | 福永 津嵩, 岩崎 渉 | Tsukasa Fukunaga, Wataru Iwasaki | Mirage 2.0: fast and memory-efficient reconstruction of gene-content evolution considering heterogeneous evolutionary patterns among gene families. | Bioinformatics. 2022 Aug 10; 38(16): 4039-4041. | 35771653 | doi: 1093/bioinformatics/btac433 |
| 89 | 清水 元樹 | motoki shimizu | A genetically linked pair of NLR immune receptors shows contrasting patterns of evolution. | Proc Natl Acad Sci U S A. 2022 Jul 05; 119(27): e2116896119. | 35771942 | doi: 1073/pnas.2116896119 |
| 90 | 深井 英吾 | Eigo Fukai | Widespread and transgenerational retrotransposon activation in inter- and intraspecies recombinant inbred populations of Lotus japonicus. | Plant J. 2022 Sep; 111(5): 1397-14doi: | 35792830 | doi: 1111/tpj.15896 |
| 91 | 藤井 雅史 | Masashi Fujii | Epigenetic-structural changes in X chromosomes promote Xic pairing during early differentiation of mouse embryonic stem cells. | Biophys Physicobiol. 2022; 19: 1-14. | 35797402 | doi: 2142/biophysico.bppb-v19.0018 |
| 92 | 池田 秀也, 川島 秀一 | Shuya Ikeda, Shuichi Kawashima | TogoID: an exploratory ID converter to bridge biological datasets. | Bioinformatics. 2022 Sep 02; 38(17): 4194-4199. | 35801937 | doi: 1093/bioinformatics/btac491 |
| 93 | 宮 路 直実 | Naomi Miyaji | Whole-Genome DNA Methylation Analysis in Brassica rapa subsp. perviridis in Response to Albugo candida Infection. | Front Plant Sci. 2022; 13: 849358. | 35812966 | doi: 3389/fpls.2022.849358 |
| 94 | 久保 貴彦 | Takahiko Kubo | Whole-Genome Sequencing of Rice Mutant Library Members Induced by N-Methyl-N-Nitrosourea Mutagenesis of Fertilized Egg Cells. | Rice (N Y). 2022 Jul 16; 15(1): 38. | 35841399 | doi: 1186/s12284-022-00585-1 |
| 95 | 越水 静 | Shizuka Koshimizu | Phylogenetic distribution and expression pattern analyses identified a divergent basal body assembly protein involved in land plant spermatogenesis. | New Phytol. 2022 Nov; 236(3): 1182-1196. | 35842793 | doi: 1111/nph.18385 |
| 96 | 大野 翔 | Sho Ohno | A novel aldo-keto reductase gene is involved in 6'-deoxychalcone biosynthesis in dahlia (Dahlia variabilis). | Planta. 2022 Jul 24; 256(3): 47. | 35871668 | doi: 1007/s00425-022-03958-4 |
| 97 | 夏目 俊, 杉原 優, 工藤 葵, 阿部 陽 | Satoshi Natsume, Yu Sugihara, Aoi Kudoh, Akira Abe | Genome Analysis Revives a Forgotten Hybrid Crop Edo-dokoro in the Genus Dioscorea. | Plant Cell Physiol. 2022 Nov 22; 63(11): 1667-1678. | 35876055 | doi: 1093/pcp/pcac109 |
| 98 | 藤原 奈央子 | naoko fujiwara | MPP6 stimulates both RRP6 and DIS3 to degrade a specified subset of MTR4-sensitive substrates in the human nucleus. | Nucleic Acids Res. 2022 Aug 26; 50(15): 8779-8806. | 35902094 | doi: 1093/nar/gkac559 |
| 99 | 木村 朋紀 | Tomoki Kimura | Cadmium inhibits forskolin-induced differentiation of human placental BeWo cells. | J Toxicol Sci. 2022; 47(8): 309-315. | 35908931 | doi: 2131/jts.47.309 |
| 100 | 五味 良太 | Ryota Gomi | Chromosomal integration of bla CTX-M genes in diverse Escherichia coli isolates recovered from river water in Japan. | Curr Res Microb Sci. 2022; 3: 100144. | 35909619 | doi: 1016/j.crmicr.2022.100144 |
| 101 | 川久保 修佑 | Shusuke Kawakubo | Leek Yellow Stripe Virus Can Adjust for Host Adaptation by Trimming the N-Terminal Domain to Allow the P1 Protein to Function as an RNA Silencing Suppressor. | Plant Pathol J. 2022 Aug; 38(4): 383-394. | 35953058 | doi: 5423/PPJ.FT.06.2022.0077 |
| 102 | 角谷 徹仁 | tetsuji kakutani | Transcription-coupled and epigenome-encoded mechanisms direct H3K4 methylation. | Nat Commun. 2022 Aug 11; 13(1): 4521. | 35953471 | doi: 1038/s41467-022-32165-8 |
| 103 | 藤井 雅史, 黒田 真也 | Masashi Fujii, Shinya Kuroda | In vivo transomic analyses of glucose-responsive metabolism in skeletal muscle reveal core differences between the healthy and obese states. | Sci Rep. 2022 Aug 12; 12(1): 13719. | 35962137 | doi: 1038/s41598-022-17964-9 |
| 104 | 佐藤 大気 | Daiki Sato | Humanized substitutions of Vmat1 in mice alter amygdala-dependent behaviors associated with the evolution of anxiety. | iScience. 2022 Aug 19; 25(8): 104800. | 35992083 | doi: 10.1016/j.isci.2022.104800 |
| 105 | 川上 聖司 | Satoshi Kawakami | Rhythmic transcription of Bmal1 stabilizes the circadian timekeeping system in mammals. | Nat Commun. 2022 Aug 23; 13(1): 4652. | 35999195 | doi: 1038/s41467-022-32326-9 |
| 106 | 中川 草 | So Nakagawa | NeoRdRp: A Comprehensive Dataset for Identifying RNA-dependent RNA Polymerases of Various RNA Viruses from Metatranscriptomic Data. | Microbes Environ. 2022; 37(3): ME22001. | 36002304 | doi: 1264/jsme2.ME22001 |
| 107 | 木村 敦 | Atsushi Kimura | Evidence for a functional role of Start, a long noncoding RNA, in mouse spermatocytes. | PLoS One. 2022; 17(8): e0273279. | 36006924 | doi: 1371/journal.pone.0273279 |
| 108 | 高木 亙 | Wataru Takagi | Molecular and morphological investigations on the renal mechanisms enabling euryhalinity of red stingray Hemitrygon akajei. | Front Physiol. 2022; 13: 953665. | 36017340 | doi: 3389/fphys.2022.953665 |
| 109 | 藤井 雅史 | Masashi Fujii | Methylome data derived from maternal-zygotic DNA methyltransferase 3aa-/- zebrafish. | Data Brief. 2022 Oct; 44: 108514. | 36034642 | doi: 1016/j.dib.2022.108514 |
| 110 | 田村 啓太 | Keita Tamura | Genome Sequence of the Edible Green Alga Ulva prolifera, Originating from the Yoshinogawa River in Japan. | Microbiol Resour Announc. 2022 Oct 20; 11(10): e0043022. | 36036606 | doi: 1128/mra.00430-22 |
| 111 | 前田 雪 | Yuki Maeda | Molecular characterization of Vasa homolog in the pen shell Atrina pectinata: cDNA cloning and expression analysis during gonadal development. | Comp Biochem Physiol B Biochem Mol Biol. 2022 Sep 03; 263: 110798. | 36064136 | doi: 1016/j.cbpb.2022.110798 |
| 112 | 矢原 耕史 | Koji Yahara | Whole blood transcriptome profiling identifies gene expression subnetworks and a key gene characteristic of the rare type of osteomyelitis. | Biochem Biophys Rep. 2022 Dec; 32: 101328. | 36065290 | doi: 1016/j.bbrep.2022.101328 |
| 113 | 國枝 武和 | Takekazu Kunieda | Stress-dependent cell stiffening by tardigrade tolerance proteins that reversibly form a filamentous network and gel. | PLoS Biol. 2022 Sep; 20(9): e3001780. | 36067153 | doi: 1371/journal.pbio.3001780 |
| 114 | 新里 宙也 | Chuya Shinzato | Genomic analysis of a reef-building coral, Acropora digitifera, reveals complex population structure and a migration network in the Nansei Islands, Japan. | Mol Ecol. 2022 Oct; 31(20): 5270-5284. | 36082782 | doi: 1111/mec.16665 |
| 115 | 松井 求 | Motomu Matsui | Lifestyle Evolution Analysis by Binary-State Speciation and Extinction (BiSSE) Model. | Methods Mol Biol. 2022; 2569: 327-342. | 36083456 | doi: 1007/978-1-0716-2691-7_16 |
| 116 | 川村 昇吾, 矢倉 勝 | Shogo Kawamura, Masaru Yagura | MarpolBase Expression: A Web-Based, Comprehensive Platform for Visualization and Analysis of Transcriptomes in the Liverwort Marchantia polymorpha. | Plant Cell Physiol. 2022 Nov 22; 63(11): 1745-1755. | 36083565 | doi: 1093/pcp/pcac129 |
| 117 | 草間 和哉 | Kazuya Kusama | Toll-like receptor signaling pathway triggered by inhibition of serpin A1 stimulates production of inflammatory cytokines by endometrial stromal cells. | Front Endocrinol (Lausanne). 2022; 13: 966455. | 36093086 | doi: 3389/fendo.2022.966455 |
| 118 | 瀬川 高弘 | takahiro segawa | Application of a high-throughput quantitative PCR system for simultaneous monitoring of SARS-CoV-2 variants and other pathogenic viruses in wastewater. | Sci Total Environ. 2022 Dec 20; 853: 158659. | 36096223 | doi: 1016/j.scitotenv.2022.158659 |
| 119 | 渡邊 美穂 | Miho Watanabe | Sulfuricystis multivorans gen. nov., sp. nov. and Sulfuricystis thermophila sp. nov., facultatively autotropic sulfur-oxidizing bacteria isolated from a hot spring, and emended description of the genus Rugosibacter. | Arch Microbiol. 2022 Sep 02; 204(9): 595. | 36102984 | doi: 1007/s00203-022-03186-0 |
| 120 | 林 俊宏 | Toshihiro Hayashi | Idiopathic rapid eye movement sleep behavior disorder in Japan: An observational study. | Parkinsonism Relat Disord. 2022 Oct; 103: 129-135. | 36113390 | doi: 1016/j.parkreldis.2022.08.011 |
| 121 | Cronin Adam | Cronin Adam | Differential Gene Expression Correlates with Behavioural Polymorphism during Collective Behaviour in Cockroaches. | Animals (Basel). 2022 Sep 08; 12(18): 2354. | 36139214 | doi: 3390/ani12182354 |
| 122 | 渡邊 美穂 | Miho Watanabe | Desulfofustis limnaeus sp. nov., a freshwater sulfate-reducing bacterium isolated from marsh soil. | Arch Microbiol. 2022 Sep 27; 204(10): 647. | 36166176 | doi: 1007/s00203-022-03261-6 |
| 123 | 岡田 愛 | Ai Okada | Systematic identification of intron retention associated variants from massive publicly available transcriptome sequencing data. | Nat Commun. 2022 Sep 29; 13(1): 5357. | 36175409 | doi: 1038/s41467-022-32887-9 |
| 124 | 中川 草 | So Nakagawa | Monotreme-specific conserved putative proteins derived from retroviral reverse transcriptase. | Virus Evol. 2022; 8(2): veac084. | 36176487 | doi: 1093/ve/veac084 |
| 125 | 河村 理輝 | Riki Kawamura | c-fos expression in the olfactory epithelium of the East African cichlid (Haplochromis chilotes) in response to odorant exposure. | J Exp Biol. 2022 Oct 15; 225(20): jeb244737. | 36189492 | doi: 1242/jeb.244737 |
| 126 | 郷 康広 | Yasuhiro Go | Cognitive genomics of learning delay and low level of social performance monitoring in macaque. | Sci Rep. 2022 Oct 03; 12(1): 16539. | 36192455 | doi: 1038/s41598-022-20948-4 |
| 127 | 一柳 健司 | Kenji Ichiyanagi | Sequence divergence and retrotransposon insertion underlie interspecific epigenetic differences in primates. | Mol Biol Evol. 2022 Oct 11; 39(10): msac208. | 36219870 | doi: 1093/molbev/msac208 |
| 128 | 岩切 淳一 | Junichi Iwakiri | DDX41 coordinates RNA splicing and transcriptional elongation to prevent DNA replication stress in hematopoietic cells. | Leukemia. 2022 Nov; 36(11): 2605-2620. | 36229594 | doi: 1038/s41375-022-01708-9 |
| 129 | 加藤 有己 | Yuki Kato | Alignment of single-cell trajectory trees with CAPITAL. | Nat Commun. 2022 Oct 14; 13(1): 5972. | 36241645 | doi: 1038/s41467-022-33681-3 |
| 130 | 飯塚 康介 | kosuke iizuka | Real time monitoring of cold Ca2+ dependent transcription and its modulation by NCX inhibitors. | Sci Rep. 2022 Oct 15; 12(1): 17325. | 36243739 | doi: 1038/s41598-022-22166-4 |
| 131 | 布施 直之 | Naoyuki Fuse | Transcriptome features of innate immune memory in Drosophila. | PLoS Genet. 2022 Oct; 18(10): e1010005. | 36252180 | doi: 1371/journal.pgen.1010005 |
| 132 | 久保 顕登 | Kento Kubo | Structure-based screening for functional non-coding RNAs in fission yeast identifies a factor repressing untimely initiation of sexual differentiation. | Nucleic Acids Res. 2022 Oct 28; 50(19): 11229-11242. | 36259651 | doi: 1093/nar/gkac825 |
| 133 | 矢倉 勝, 工樂 樹洋 | Masaru Yagura, Shigehiro Kuraku | Squalomix: shark and ray genome analysis consortium and its data sharing platform. | F1000Res. 2022; 11: 1077. | 36262334 | doi: 12688/f1000research.123591.1 |
| 134 | 遠野 雅徳, 谷澤 靖洋 | masanori tohno, Yasuhiro Tanizawa | A novel species of lactic acid bacteria, Ligilactobacillus pabuli sp. nov., isolated from alfalfa silage. | Int J Syst Evol Microbiol. 2022 Oct; 72(10): | 36269574 | doi: 1099/ijsem.0.005587 |
| 135 | 吉田 真明, 廣田 主樹 | Masa-Aki Yoshida, Kazuki Hirota | Gene Recruitments and Dismissals in the Argonaut Genome Provide Insights into Pelagic Lifestyle Adaptation and Shell-like Eggcase Reacquisition. | Genome Biol Evol. 2022 Nov 04; 14(11): evac140. | 36283693 | doi: 1093/gbe/evac140 |
| 136 | 今井 裕季子 | yukiko imai | Therapeutic Potential of Adipose Stem Cell-Derived Conditioned Medium on Scar Contraction Model. | Biomedicines. 2022 Sep 24; 10(10): 2388. | 36289649 | doi: 3390/biomedicines10102388 |
| 137 | 瀬川 高弘 | takahiro segawa | Astrocytic dysfunction induced by ABCA1 deficiency causes optic neuropathy. | Sci Adv. 2022 Nov 04; 8(44): eabq1081. | 36332025 | doi: 1126/sciadv.abq1081 |
| 138 | 金森 駿介, 河田 雅圭 | shunsuke kanamori, Masakado Kawata | Draft genome of six Cuban Anolis lizards and insights into genetic changes during their diversification. | BMC Ecol Evol. 2022 Nov 04; 22(1): 129. | 36333669 | doi: 1186/s12862-022-02086-7 |
| 139 | 沖 真弥 | Shinya Oki | The Histone Methyltransferase SETD8 Regulates the Expression of Tumor Suppressor Genes via H4K20 Methylation and the p53 Signaling Pathway in Endometrial Cancer Cells. | Cancers (Basel). 2022 Oct 31; 14(21): 5367. | 36358786 | doi: 3390/cancers14215367 |
| 140 | 坂本 卓磨 | Takuma Sakamoto | Nutritional and metabolic process of the dung beetle Phelotrupes auratus depends on the plant ingredients that the herbivores eat. | BMC Genomics. 2022 Nov 12; 23(1): 751. | 36371160 | doi: 1186/s12864-022-08982-y |
| 141 | 松井 求 | Motomu Matsui | Nondestructive microbial discrimination using single-cell Raman spectra and random forest machine learning algorithm. | STAR Protoc. 2022 Dec 16; 3(4): 101812. | 36386892 | doi: 1016/j.xpro.2022.101812 |
| 142 | 田中 龍聖,菊地 泰生 | Ryusei Tanaka,Taisei Kikuchi | The compact genome of Caenorhabditis niphades n. sp., isolated from a wood-boring weevil, Niphades variegatus. | BMC Genomics. 2022 Nov 22; 23(1): 765. | 36418933 | doi: 1186/s12864-022-09011-8 |
| 143 | 武藤 吉徳 | Yoshinori Muto | Identification of Key Genes and Pathways Associated with Preeclampsia by a WGCNA and an Evolutionary Approach. | Genes (Basel). 2022 Nov 17; 13(11): 2134. | 36421809 | doi: 3390/genes13112134 |
| 144 | 佐藤 健吾 | Kengo Sato | Direct Inference of Base-Pairing Probabilities with Neural Networks Improves Prediction of RNA Secondary Structures with Pseudoknots. | Genes (Basel). 2022 Nov 18; 13(11): 2155. | 36421829 | doi: 3390/genes13112155 |
| 145 | 奥野 聖也 | Seiya Okuno | Community phylogeny and spatial scale affect phylogenetic diversity metrics in a species-rich rainforest in Borneo. | Ecol Evol. 2022 Nov; 12(11): e9536. | 36440315 | doi: 1002/ece3.9536 |
| 146 | 小野 幸輝 | yukiteru ono | PBSIM3: a simulator for all types of PacBio and ONT long reads. | NAR Genom Bioinform. 2022 Dec; 4(4): lqac092. | 36465498 | doi: 1093/nargab/lqac092 |
| 147 | 片山 俊明 | Toshiaki Katayama | TogoVar: A comprehensive Japanese genetic variation database. | Hum Genome Var. 2022 Dec 12; 9(1): 44. | 36509753 | doi: 1038/s41439-022-00222-9 |
| 148 | 小笠原 理 | Ogasawara Osamu | Building cloud computing environments for genome analysis in Japan. | Hum Genome Var. 2022 Dec 14; 9(1): 46. | 36517473 | doi: 1038/s41439-022-00223-8 |
| 149 | 八谷 剛史 | Tsuyoshi Hachiya | The NBDC-DDBJ imputation server facilitates the use of controlled access reference panel datasets in Japan. | Hum Genome Var. 2022 Dec 20; 9(1): 48. | 36539398 | doi: 1038/s41439-022-00225-6 |
| 150 | 三科 興平 | Kohei Mishina | Genome-Wide Analysis of Snf2 Gene Family Reveals Potential Role in Regulation of Spike Development in Barley. | Int J Mol Sci. 2022 Dec 27; 24(1): 457. | 36613901 | doi: 3390/ijms24010457 |
| 151 | 山田 啓介 | Keisuke Yamada | Prediction of RNA-protein interactions using a nucleotide language model. | Bioinform Adv. 2022; 2(1): vbac023. | 36699410 | doi: 1093/bioadv/vbac023 |
| 152 | 福永 津嵩 | Tsukasa Fukunaga | LinAliFold and CentroidLinAliFold: fast RNA consensus secondary structure prediction for aligned sequences using beam search methods. | Bioinform Adv. 2022; 2(1): vbac078. | 36699418 | doi: 1093/bioadv/vbac078 |
| 153 | 尾崎 遼 | Haruka Ozaki | CCPLS reveals cell-type-specific spatial dependence of transcriptomes in single cells. | Bioinformatics. 2022 Oct 31; 38(21): 4868-4877. | 36795083 | doi: 1093/bioinformatics/btac599 |
| 154 | 大田 達郎 | Tazro Ohta | Workflow sharing with automated metadata validation and test execution to improve the reusability of published workflows. | Gigascience. 2022 Dec 28; 12: giad006. | 36810800 | doi: 1093/gigascience/giad006 |
| 155 | 矢原 耕史 | Koji Yahara | Repeated out-of-Africa expansions of Helicobacter pylori driven by replacement of deleterious mutations. | Nat Commun. 2022 Nov 11; 13(1): 6842. | 36941300 | doi: 1038/s41467-022-34475-3 |
| 156 | 筒井 直昭 | Naoaki Tsutsu | Multiple insulin-like peptides in the gonads of the kuruma prawn Marsupenaeus japonicus | Fisheries Science. 2022; 88:387-396 | NULL | doi: 10.1007/s12562-022-01596-z |
| 157 | 林 方州 | Fangzhou Lin | Cosmos Propagation Network: Deep learning model for point cloud completion | Neurocomputing. 2022 October 1; 507: 221-234 | NULL | doi: 10.1016/j.neucom.2022.08.007 |
| 158 | 近藤 文哉 | Fumiya Kondo | RNA sequencing in parthenocarpic chili pepper (Capsicum annuum) fruit reveals genes involved in transcriptional regulation of capsaicinoid biosynthesis genes responsible for the fluctuation of pungency | Scientia Horticulturae. 2022 December; 306: 111456 | NULL | doi: 10.1016/j.scienta.2022.111456 |
| 159 | 稲葉 皓子 | Hiroko Inaba | Generative aptamer discovery using RaptGen | Nat Comput Sci. 2022 Jun; 2:378-386 | NULL | doi: 10.1038/s43588-022-00249-6 |
| 160 | 美世 一守, 岩崎 渉 | Kazumori Mise, Wataru Iwasaki | Unexpected absence of ribosomal protein genes from metagenome-assembled genomes | ISME Communications. 2022; 2: 118 | NULL | doi: 10.1038/s43705-022-00204-6 |
| 161 | 栗田 隆気 | Takaki Kurita | Comparison of morphological identification and DNA metabarcoding for dietary analysis of faeces from a subtropical lizard | Wildlife Research. 2022 September; 50(3): 224-236 | NULL | doi: 10.1071/WR22054 |
| 162 | 坂山 英俊 | Hidetoshi Sakayama | Morphology, taxonomy and phylogenetic positions of two Spirogyra species (Zygnematophyceae, Streptophyta) with replicate and semi-replicate transverse walls from Japan | Phycologia. 2022; 61: 425-435 | NULL | doi: 10.1080/00318884.2022.2068299 |
| 163 | 山田 啓介 | Keisuke Yamada | Prediction of RNA-protein interactions using a nucleotide language model | Bioinformatics Advances, 2022. ; 2(1): 1-9 | NULL | doi: 10.1093/bioadv/vbac023 |
| 164 | 晝間 敬 | Kei Hiruma | Genome Resource of Colletotrichum spaethianum, the Causal Agent of Leaf Anthracnose in Polygonatum falcatum | PhytoFrontiers. 2022; 2(2): 152-155 | NULL | doi: 10.1094/PHYTOFR-12-21-0082-A |
| 165 | 田原 沙絵子 | Saeko Tahara | MOCCS profile analysis clarifies the cell type dependency of transcription factor-binding sequences and cis-regulatory SNPs in humans | bioRxiv. 2022 Apr 10; | NULL | doi: 10.1101/2022.04.08.487641 |
| 166 | 岸田 拓士 | Takushi Kishida | Genetic diversity and population history of the Japanese black bear (Ursus thibetanus japonicus) based on the genome-wide analyses. | Ecological Research. 2022; 27(5): 647-657 | NULL | doi: 10.1111/1440-1703.12335 |
| 167 | 岩切 淳一 | Junichi Iwakiri | 大規模配列データにより加速するノンコーディングRNA研究 | JSBi Bioinformatics Review. 2022; 3(1): 1-10 | NULL | doi: 10.11234/jsbibr.2022.primer1 |
| 168 | 北野 誉 | Takashi Kitano | Complete mitochondrial genomes of three fairy shrimps from snowmelt pools in Japan | BMC Zoology. 2022; 7(11) | NULL | doi: 10.1186/s40850-022-00111-2 |
| 169 | 末竹 裕貴 | Hirotaka Suetake | Sapporo: A workflow execution service that encourages the reuse of workflows in various languages in bioinformatics | F1000Research. 2022 Aug | NULL | doi: 10.12688/f1000research.122924.1 |
| 170 | 出口 亜由美 | Ayumi Deguxhi | Localized Repression of Two bHLH Genes is Involved in the Formation of White Margins and White Abaxial Surfaces in Carnation Petals by Inducing the Absence of Anthocyanin Synthesis | The Horticulture Journal. 2022; 91(1): 68-84 | NULL | doi: 10.2503/hortj.utd-313 |
| 171 | 横溝 匠, 高橋 佑磨 | Takumi Yokomizo, Yuma Takahashi | Endogenous rhythm variation and adaptation to the tidal environment in the freshwater snail, Semisulcospira reiniana | Frontiers in Ecology and Evolution. 2022 December; 10 | NULL | doi: 10.3389/fevo.2022.1078234 |
| 172 | 松波 雅俊 | Masatoshi Matsunami | Transcriptomics on Social Interactions in Termites: Effects of Soldier Presence | Frontiers in Ecology and Evolution. 2022 June 27; 10 | NULL | doi: 10.3389/fevo.2022.924151/ |
| 173 | 安田 仁奈 | Nina Yasuda | Integrated Population Genomic Analysis and Numerical Simulation to Estimate Larval Dispersal of Acanthaster cf. solaris Between Ogasawara and Other Japanese Regions | Frontiers in Marine Science. 2022 Jan; 8(688139) | NULL | doi: 10.3389/fmars.2021.688139 |
| 174 | 齋藤 裕 | Yutaka Saito | 深層学習によるタンパク質の機能予測と設計 | 生物工学会誌. 2022 Nov; 100(11): 589-592 | NULL | doi: 10.34565/seibutsukogaku.100.11_589 |
| 175 | 藤井 雅史, 粟津 暁紀 | Masashi Fujii, Akinori Awazu | Self-Organization of Diverse Directional Hierarchical Networks in Simple Coupled Maps with Connection Changes | Journal of the Physical Society of Japan. 2022; 91(023801) | NULL | doi: 10.7566/JPSJ.91.023801 |
| 176 | 粟津 暁紀 | Akinori Awazu | Formation of Small-World Network Containing Module Networks in Globally and Locally Coupled Map System with Changes in Global Connection with Time Delay Effects | J. Phys. Soc. Jpn. 2022 February; 9 | NULL | doi: 10.7566/JPSJ.92.034801 |
| 177 | 齋藤 裕 | Yutaka Saito | EvoOpt: an MSA-guided, fully unsupervised sequence optimization pipeline for protein design | Machine Learning in Structural Biology Workshop, The 36th Conference on Neural Information Processing Systems (NeurIPS 2022) | NULL | NULL |