| Supercomputer users in authors list (Japanese) | Supercomputer users in authors list | Title | Journal, Volume, Number, Pages | PMID | DOI |
| 1 | 松波 雅俊 | Masatoshi Matsunami | Vertebrate paralogous conserved noncoding sequences may be related to gene expressions in brain. | Genome Biol Evol. 2013;5(1):140-50. | 23267051 | doi: 10.1093/gbe/evs128 |
| 2 | 二階堂 愛 | Itoshi Nikaido | Context-dependent wiring of Sox2 regulatory networks for self-renewal of embryonic and trophoblast stem cells. | Mol Cell. 2013 Nov 7;52(3):380-92. | 24120664 | doi: 10.1016/j.molcel.2013.09.002 |
| 3 | 二階堂 愛 | Itoshi Nikaido | Quartz-Seq: a highly reproducible and sensitive single-cell RNA sequencing method, reveals non-genetic gene-expression heterogeneity. | Genome Biol. 2013 Apr 17;14(4):R31. | 23594475 | doi: 10.1186/gb-2013-14-4-r31 |
| 4 | 細道 一善, 井ノ上 逸朗 | Kazuyoshi Hosomichi, Ituro Inoue | Phase-defined complete sequencing of the HLA genes by next-generation sequencing. | BMC Genomics. 2013 May 28;14:355. | 23714642 | doi: 10.1186/1471-2164-14-355 |
| 5 | 飯山 和弘 | Kazuhiro Iiyama | Draft Genome Sequence of Paenibacillus popilliae ATCC 14706T | Journal of Insect Biotechnology and Sericology, 2013 Volume 82 Issue 2 Pages 2_045-2_048 | NULL | doi: 10.11416/jibs.82.2_045 |
| 6 | 佐々木 直文 | Naobumi Sasaki | The first symbiont-free genome sequence of marine red alga, Susabi-nori (Pyropia yezoensis). | PLoS One. 2013;8(3):e57122. | 23536760 | doi: 10.1371/journal.pone.0057122 |
| 7 | 中川 草 | So Nakagawa | Dynamic evolution of endogenous retrovirus-derived genes expressed in bovine conceptuses during the period of placentation. | Genome Biol Evol. 2013;5(2):296-306. | 23335121 | doi: 10.1093/gbe/evt007 |
| 8 | 中川 草 | So Nakagawa | Phylogenetic and structural diversity in the feline leukemia virus env gene. | PLoS One. 2013 Apr 11;8(4):e61009. | 23593376 | doi: 10.1371/journal.pone.0061009 |
| 9 | 中川 草 | So Nakagawa | DNA-binding specificity changes in the evolution of forkhead transcription factors. | Proc Natl Acad Sci U S A. 2013 Jul 23;110(30):12349-54. | 23836653 | doi: 10.1073/pnas.1310430110 |
| 10 | 中川 草 | So Nakagawa | Identification of a novel subgroup of Koala retrovirus from Koalas in Japanese zoos. | J Virol. 2013 Sep;87(17):9943-8. | 23834806 | doi: 10.1128/JVI.01385-13 |
| 11 | 中川 草 | So Nakagawa | Fematrin-1 is involved in fetomaternal cell-to-cell fusion in Bovinae placenta and has contributed to diversity of ruminant placentation. | J Virol. 2013 Oct;87(19):10563-72. | 23864631 | doi: 10.1128/JVI.01398-13 |
| 12 | 中川 草 | So Nakagawa | Transcriptional regulation of two conceptus interferon tau genes expressed in Japanese black cattle during peri-implantation period. | PLoS One. 2013 Nov 27;8(11):e80427. | 24348910 | doi: 10.1371/journal.pone.0080427 |
| 13 | 野口 英樹 | Hideki Noguchi | Coelacanth genomes reveal signatures for evolutionary transition from water to land. | Genome Res. 2013 Oct;23(10):1740-8. | 23878157 | doi: 10.1101/gr.158105.113 |
| 14 | 寺田 愛花, 瀬々 潤 | Aika Terada, Jun Sese | Statistical significance of combinatorial regulations. | Proc Natl Acad Sci U S A. 2013 Aug 6;110(32):12996-3001. | 23882073 | doi: 10.1073/pnas.1302233110 |
| 15 | 高田 豊行 | Toyoyuki Takada | The ancestor of extant Japanese fancy mice contributed to the mosaic genomes of classical inbred strains. | Genome Res. 2013 Aug;23(8):1329-38. | 23604024 | doi: 10.1101/gr.156497.113 |
| 16 | 長崎 英樹, 望月 孝子, 神沼 英里, 中村 保一 | Hideki Nagasaki, Takako Mochizuki,Eli Kaminuma,Yasukazu Nakamura | DDBJ read annotation pipeline: a cloud computing-based pipeline for high-throughput analysis of next-generation sequencing data. | DNA Res. 2013 Aug;20(4):383-90. | 23657089 | doi: 10.1093/dnares/dst017 |
| 17 | 近藤 伸二 | Shinji Kondo | Base composition and nucleosome density in exonic and intronic regions in genes of the filamentous ascomycetes Aspergillus nidulans and Aspergillus oryzae. | Gene. 2013 Aug 1;525(1):5-10. | 23664982 | doi: 10.1016/j.gene.2013.04.077 |
| 18 | 大田 達郎 | Tazro Ohta | Experimental design-based functional mining and characterization of high-throughput sequencing data in the sequence read archive. | PLoS One. 2013 Oct 22;8(10):e77910. | 24167589 | doi: 10.1371/journal.pone.0077910 |
| 19 | 柴田 朋子 | Tomoko F Shibata | Complete Genome Sequence of Burkholderia sp. Strain RPE64, Bacterial Symbiont of the Bean Bug Riptortus pedestris. | Genome Announc. 2013 Jul 5;1(4):e00441-13. | 23833137 | doi: 10.1128/genomeA.00441-13 |
| 20 | 前原 一満,大川 恭行 | Kazumitsu Maehara,Jun Odawara | A co-localization model of paired ChIP-seq data using a large ENCODE data set enables comparison of multiple samples. | Nucleic Acids Res. 2013 Jan 7;41(1):54-62. | 23125363 | doi: 10.1093/nar/gks1010 |
| 21 | 浜田 道昭 | Michiaki Hamada | PBSIM: PacBio reads simulator--toward accurate genome assembly | Bioinformatics. 2013 Jan 1;29(1):119-21. | 23129296 | doi: 10.1093/bioinformatics/bts649 |
| 22 | 小柳 亮 | Ryo Koyanagi | MarinegenomicsDB: an integrated genome viewer for community-based annotation of genomes. | Zoolog Sci. 2013 Oct;30(10):797-800. | 24125644 | doi: 10.2108/zsj.30.797 |
| 23 | 小笠原 理 | Osamu Ogasawara | DDBJ new system and service refactoring. | Nucleic Acids Res. 2013 Jan;41(Database issue):D25-9. | 23180790 | doi: 10.1093/nar/gks1152 |