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Published Papers(2019)

List of papers published by users January 1st, 2019 -- December 31st, 2019

Papers compiled at the end-of-year renewal in 2019

Supercomputer users in authors list (Japanese)Supercomputer users in authors listTitleJournal, Volume, Number, PagesPMIDDOI
1牧野 能士, 河田 雅圭Takashi Makino,Masakado KawataInvasive invertebrates associated with highly duplicated gene contentMol Ecol. 2019 Apr;28(7):1652-1663.30811716doi: 10.1111/mec.15019
2上田 真保子Mahoko Takahashi UedaSystematic survey of non-retroviral virus-like elements in eukaryotic genomesVirus Res. 2019 Mar;262:30-36.29425804doi: 10.1016/j.virusres.2018.02.002
3松波 雅俊M MatsunamiCaste-specific microRNA expression in termites: insights into soldier differentiation.Insect Mol Biol. 2019 Feb;28(1):86-98.30126008doi: 10.1111/imb.12530
4前野 慎太朗, 遠藤 明仁Shintaro Maeno,Akihito EndoIntroduction of bifunctional alcohol/acetaldehyde dehydrogenase gene (adhE) in Fructobacillus fructosus settled its fructophilic characteristicsRes Microbiol. Jan-Feb 2019;170(1):35-42.30291951doi: 10.1016/j.resmic.2018.09.004
5黒田 真也Shinya KurodaReconstruction of global regulatory network from signaling to cellular functions using phosphoproteomic dataGenes Cells. 2019 Jan;24(1):82-93.30417516doi: 10.1111/gtc.12655
6加賀谷 祐輝Yuki KagayaCOXPRESdb v7: a gene coexpression database for 11 animal species supported by 23 coexpression platforms for technical evaluation and evolutionary inferenceNucleic Acids Res. 2019 Jan 8;47(D1):D55-D62.30462320doi: 10.1093/nar/gky1155
7谷澤 靖洋, 遠野 雅徳Yasuhiro Tanizawa,Masanori TohnoReclassification of Paenibacillus thermophilus Zhou et al. 2013 as a later heterotypic synonym of Paenibacillus macerans (Schardinger 1905) Ash et al. 1994Int J Syst Evol Microbiol. 2019 Feb;69(2):417-421.30540240doi: 10.1099/ijsem.0.003160
8片山 俊明Toshiaki KatayamaTogoGenome/TogoStanza: modularized Semantic Web genome databaseDatabase (Oxford). 2019 Jan 1;2019:bay132.30624651doi: 10.1093/database/bay132
9前田 安信Yasunobu MaedaSecretome analysis of Strongyloides venezuelensis parasitic stages reveals that soluble and insoluble proteins are involved in its parasitismParasit Vectors. 2019 Jan 9;12(1):21.30626426doi: 10.1186/s13071-018-3266-x
10遠野 雅徳, 谷澤 靖洋Masanori Tohno,Yasuhiro TanizawaLactobacillus salitolerans sp. nov., a novel lactic acid bacterium isolated from spent mushroom substratesInt J Syst Evol Microbiol. 2019 Apr;69(4):964-969. 30628884doi: 10.1099/ijsem.0.003224
11平田 潤Jun HirataGenetic and phenotypic landscape of the major histocompatibilty complex region in the Japanese population.Nat Genet. 2019 Mar;51(3):470-480.30692682doi: 10.1038/s41588-018-0336-0
12根本 理子Michiko NemotoIntegrated transcriptomic and proteomic analyses of a molecular mechanism of radular teeth biomineralization in Cryptochiton stelleri.Sci Rep. 2019 Jan 29;9(1):856.30696920doi: 10.1038/s41598-018-37839-2
13吉田 健太郎Kentaro YoshidaOrigin of wheat B-genome chromosomes inferred from RNA sequencing analysis of leaf transcripts from division Sitopsis species of AegilopsDNA Res. 2019 Apr 1;26(2):171-182.30715317doi: 10.1093/dnares/dsy047
14坊農 秀雅Hidemasa BonoComparative analysis of seven types of superoxide dismutases for their ability to respond to oxidative stress in Bombyx mori.Sci Rep. 2019 Feb 18;9(1):2170.30778096doi: 10.1038/s41598-018-38384-8
15平野 雅規Masaki HiranoAberrant Active cis-Regulatory Elements Associated with Downregulation of RET Finger Protein Overcome Chemoresistance in GlioblastomaCell Rep. 2019 Feb 26;26(9):2274-2281.e5.30811978doi: 10.1016/j.celrep.2019.01.109
16諸橋 賢吾Kengo MorohashiGenome-wide analysis of MpBHLH12, a IIIf basic helix-loop-helix transcription factor of Marchantia polymorpha.J Plant Res. 2019 Mar;132(2):197-209.30840209doi: 10.1007/s10265-019-01095-w
17尾崎 遼Haruka OzakiPossible cross-feeding pathway of facultative methylotroph Methyloceanibacter caenitepidi Gela4 on methanotroph Methylocaldum marinum S8PLoS One. 2019 Mar 14;14(3):e0213535.30870453doi: 10.1371/journal.pone.0213535
18岩切 淳一Junichi IwakirireactIDR: evaluation of the statistical reproducibility of high-throughput structural analyses towards a robust RNA structure predictionBMC Bioinformatics. 2019 Mar 29;20(Suppl 3):130.30925857doi: 10.1186/s12859-019-2645-4
19佐藤 行人Yukuto SatoEnvironmental DNA metabarcoding to detect pathogenic Leptospira and associated organisms in leptospirosis-endemic areas of Japan.Sci Rep. 2019 Apr 25;9(1):6575.31024059doi: 10.1038/s41598-019-42978-1
20高松 壮Takeshi TakamatsuSalt Tolerance Improvement in Rice through Efficient SNP Marker-Assisted Selection Coupled with Speed-BreedingInt J Mol Sci. 2019 May 26;20(10):2585.31130712doi: 10.3390/ijms20102585
21岩切 淳一Junichi IwakiriLncRRIsearch: a web server for lncRNA-RNA interaction prediction integrated with tissue-specific expression and subcellular localization dataFront Genet. 2019 May 28;10:462.31191601doi: 10.3389/fgene.2019.00462
22佐藤 行人Yukuto SatoEvidence for frequency‐dependent selection maintaining polymorphism in the Batesian mimic Papilio polytes in multiple islands in the Ryukyus, JapanEcol Evol. 2019 Apr 24;9(10):5991-6002.31161014doi: 10.1002/ece3.5182
23大里 直樹Naoki OsatoImprovement of Detection Performance of Fusion Genes from RNA-Seq Data by Clustering Short ReadsJ Bioinform Comput Biol. 2019 Jun;17(3):1940008.31288642doi: 10.1142/S0219720019400080
24前田 太郎Taro MaedaA draft genome assembly of the solar-powered sea slug Elysia chlorotica.Sci Data. 2019 Feb 19;6:190022.30778257doi: 10.1038/sdata.2019.22
25久保 稔Minoru KuboSingle-cell transcriptome analysis of Physcomitrella leaf cells during reprogramming using microcapillary manipulationNucleic Acids Res. 2019 May 21;47(9):4539-4553.30873540doi: 10.1093/nar/gkz181
26佐藤 賢二Kenji SatouApplying Deep Learning Models to Mouse Behavior RecognitionJournal of Biomedical Science and Engineering, Vol.12 No.2, February 2019, 183-196.NULLdoi: 10.4236/jbise.2019.122012
27松波 雅俊Masatoshi MatsunamiA comprehensive reference transcriptome resource for the Iberian ribbed newt Pleurodeles waltl, an emerging model for developmental and regeneration biology.DNA Res. 2019 Jun 1;26(3):217-229.31006799doi: 10.1093/dnares/dsz003
28瀬川 高弘Takahiro SegawaGenomic analyses of Bifidobacterium moukalabense reveal adaptations to frugivore/folivore feeding behaviorMicroorganisms. 2019 Apr 4;7(4):99.30987363doi: 10.3390/microorganisms7040099
29清水 徳朗Tokurou ShimizuDetermining the parental combinations of the triploid acid citrus cultivars ‘Yellow Bell’ and ‘Tahiti lime’ using DNA marker analysesScientia HorticulturaeVolume 246, 27 February 2019, Pages 893-897NULLdoi: 10.1016/j.scienta.2018.11.071
30清水 徳朗SHIMIZU TokurouCitrus Breeding 2.0: A Novel Approach Integrating Deciphered Parentage and Genomics-assisted SelectionJARQ 53 (2), 81-85 (2019)NULLdoi: 10.6090/jarq.53.81
31大田 達郎Tazro OhtaAccumulating computational resource usage of genomic data analysis workflow to optimize cloud computing instance selectionGigascience. 2019 Apr 1;8(4):giz052. 31222199doi: 10.1093/gigascience/giz052
32渡邊 美穂Miho WatanabeGenomic Characteristics of Desulfonema ishimotonii Tokyo 01T Implying Horizontal Gene Transfer Among Phylogenetically Dispersed Filamentous Gliding BacteriaFront Microbiol. 2019 Feb 19;10:227.30837965doi: 10.3389/fmicb.2019.00227
33野々山 朋信Tomonobu NonoyamaPhenotypic determinism and contingency in the evolution of hypothetical tree-like organismsPLoS One. 2019 Oct 31;14(10):e0211671.31671104doi: 10.1371/journal.pone.0211671
34松波 雅俊Masatoshi MatsunamiA comprehensive reference transcriptome resource for the Iberian ribbed newt Pleurodeles waltl, an emerging model for developmental and regeneration biology.DNA Res. 2019 Jun 1;26(3):217-229.31006799doi: 10.1093/dnares/dsz003
35牛島 幸一郎Koichiro UshijimaA Sequence Resource of Autosomes and Additional Chromosomes in the Peach Pathotype of Alternaria alternataMol Plant Microbe Interact. 2019 Oct;32(10):1273-1276.31125281doi: 10.1094/MPMI-04-19-0093-A
36大田 達郎Tazro OhtaAccumulating computational resource usage of genomic data analysis workflow to optimize cloud computing instance selectionGigascience. 2019 Apr 1;8(4):giz052. 31222199doi: 10.1093/gigascience/giz052
37矢原 耕史Koji YaharaAnalysis of genetic recombination and the pan-genome of a highly recombinogenic bacteriophage speciesMicrob Genom. 2019 Aug;5(8):e000282.31310202doi: 10.1099/mgen.0.000282
38渡部 裕介Yusuke WatanabeAnalysis of whole Y-chromosome sequences reveals the Japanese population history in the Jomon periodSci Rep. 2019 Jun 17;9(1):8556.31209235doi: 10.1038/s41598-019-44473-z
39丹野 広貴, 遠藤 明仁Hiroki Tanno,Akihito EndoCharacterization of fructooligosaccharide-degrading enzymes in human commensal Bifidobacterium longum and Anaerostipes caccaeBiochem Biophys Res Commun. 2019 Oct 15;518(2):294-298.31420164doi: 10.1016/j.bbrc.2019.08.049
40沖 真弥Shinya OkiCis-control of Six1 expression in neural crest cells during craniofacial development.Dev Dyn. 2019 Dec;248(12):1264-1272.31464047doi: 10.1002/dvdy.109
41中尾 亮Ryo NakaoComplete Genome Sequence of Rickettsia asiatica Strain Maytaro1284, a Member of Spotted Fever Group Rickettsiae Isolated from an Ixodes ovatus Tick in Japan.Microbiol Resour Announc. 2019 Sep 12;8(37):e00886-19.31515347doi: 10.1128/MRA.00886-19
42渡邊 慧Kei WatanabeComplete sequence of mitochondrial DNA of Gloiopeltis furcata (Postels & Ruprecht) J. AgardhMitochondrial DNA B Resour. 2019 Jul 18;4(2):2543-2544.33365618doi: 10.1080/23802359.2019.1639558
43齋藤 裕Yutaka SaitoComprehensive epigenome characterization reveals diverse transcriptional regulation across human vascular endothelial cellsEpigenetics Chromatin. 2019 Dec 19;12(1):77.31856914doi: 10.1186/s13072-019-0319-0
44上田 真保子Mahoko Takahashi UedaComprehensive genomic analysis reveals dynamic evolution of mammalian transposable elements that code for viral-like protein domainsBioRxiv, November 12, 2019.NULLdoi: 10.1186/s13100-020-00224-w
45花田 耕介Kousuke HanadaContribution of Functional Divergence through Copy Number Variations to the Inter-species and Intra-species Diversity in Specialized MetabolitesFront Plant Sci. 2019 Nov 26;10:1567.31850041doi: 10.3389/fpls.2019.01567
46齋藤 裕Yutaka SaitoDeveloping a codon optimization method for improved expression of recombinant proteins in actinobacteriaSci Rep. 2019 Jun 6;9(1):8338.31171855doi: 10.1038/s41598-019-44500-z
47門田 有希Yuki MondenDevelopment of molecular markers associated with resistance to Meloidogyne incognita by performing quantitative trait locus analysis and genome-wide association study in sweetpotatoDNA Res. 2019 Oct 1;26(5):399-409. 31377774doi: 10.1093/dnares/dsz018
48湯山 育子Ikuko YuyamaDifferential gene expression in skeletal organic matrix proteins of scleractinian corals associated with mixed aragonite/calcite skeletons under low mMg/Ca conditionsPeerJ. 2019 Jul 15;7:e7241. 31341732doi: 10.7717/peerj.7241
49瀬川 高弘Takahiro SegawaDraft Genome Sequence of Clostridium tagluense strain A121T isolated from a permafrost core in the Canadian High ArcticMicrobiol Resour Announc. 2019 Jan 31;8(5):e01630-18.30714037doi: 10.1128/MRA.01630-18
50平尾 章Akira S HiraoDraft genome sequence of novel Metschnikowia sp. strain JCM 33374, a nectar yeast isolated from a bumblebeeMicrobiol Resour Announc. 2019 Sep 12;8(37):e00704-19. 31515343doi: 10.1128/MRA.00704-19
51押木 守Mamoru OshikiDraft genome sequence of the plant-growth-promoting Streptomyces sp. strain 6-11-2Microbiol Resour Announc. 2019 Nov 21;8(47):e00877-19.31753937doi: 10.1128/MRA.00877-19
52田崎 啓介, 西原 昌宏Keisuke Tasaki ,Masahiro NishiharaEffects of knocking out three anthocyanin modification genes on the blue pigmentation of gentian flowersSci Rep. 2019 Nov 1;9(1):15831.31676875doi: 10.1038/s41598-019-51808-3
53中村 圭吾, 草間 和哉Keigo Nakamura,Kazuya KusamaEffects of miR-98 in intrauterine extracellular vesicles on maternal immune regulation during the peri-implantation period in cattleSci Rep. 2019 Dec 30;9(1):20330.31889113doi: 10.1038/s41598-019-56879-w
54笠原 浩太Kota KasaharaEffects of number of parallel runs and frequency of bias-strength replacement in generalized ensemble molecular dynamics simulationsPeer J. Phys. Chem.October 15, 2019, 1:e4,NULL10.7717/peerj-pchem.4
55浜端 朋子Tomoko HamabataEndangered island endemic plants have vulnerable genomesCommun Biol. 2019 Jun 27;2:244.31263788doi: 10.1038/s42003-019-0490-7
56佐藤 行人Yukuto SatoEnvironmental DNA metabarcoding to detect pathogenic Leptospira and associated organisms in lepto spirosis-endemic areas of JapanSci Rep. 2019 Apr 25;9(1):6575.31024059doi: 10.1038/s41598-019-42978-1
57佐藤 行人Yukuto SatoEvidence for frequency‐dependent selection maintaining polymorphism in the Batesian mimic Papilio polytes in multiple islands in the Ryukyus, JapanEcol Evol. 2019 Apr 24;9(10):5991-6002.31161014doi: 10.1002/ece3.5182
58大槻 朝Hajime OhtsukiEvolution of asexual Daphnia pulex in Japan: variations and covariations of the digestive, morphological and life history traits.BMC Evol Biol. 2019 Jun 13;19(1):122.31195967doi: 10.1186/s12862-019-1453-9
59土松 隆志Takashi TsuchimatsuExploring Genetic Diversity and Signatures of Horizontal Gene Transfer in Nodule Bacteria Associa ted with Lotus japonicus in Natural EnvironmentsMol Plant Microbe Interact. 2019 Sep;32(9):1110-1120. 30880586doi: 10.1094/MPMI-02-19-0039-R
60曽田 貞滋Teiji SotaGenetic basis of species-specific genitalia reveals role in species diversificationSci Adv. 2019 Jun 26;5(6):eaav9939. 31249868doi: 10.1126/sciadv.aav9939
61吉田 聡子Satoko YoshidaGenome sequence of Striga asiatica provides insight into the evolution of plant parasitism.Curr Biol. 2019 Sep 23;29(18):3041-3052.e4.31522940doi: 10.1016/j.cub.2019.07.086
62門田 有希Yuki MondenGenome-Wide Association Studies (GWAS) for Yield and Weevil Resistance in Sweet potato (Ipomoea batatas (L.) Lam)Plant Cell Rep. 2019 Nov;38(11):1383-1392.31342081doi: 10.1007/s00299-019-02445-7
63吉田 健太郎Kentaro YoshidaGenome-wide polymorphisms from RNA sequencing assembly of leaf transcripts facilitate phylogenetic analysis and molecular marker development in wild einkorn wheatMol Genet Genomics. 2019 Oct;294(5):1327-1341. 31187273doi: 10.1007/s00438-019-01581-9
64瀬川 高弘Takahiro SegawaGenomic analyses of Bifidobacterium moukalabense reveal adaptations to frugivore/folivore feeding behaviorMicroorganisms. 2019 Apr 4;7(4):99.30987363doi: 10.3390/microorganisms7040099
65大田 達郎Tazro OhtaGWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiationNat Commun. 2019 Oct 17;10(1):4719.31624269doi: 10.1038/s41467-019-12705-5
66吉武 和敏Kazutoshi YoshitakeHaCeD-Seq: a Novel Method for Reliable and Easy Estimation About the Fish Population Using Haplotype Count from eDNAMar Biotechnol (NY). 2019 Dec;21(6):813-820.31758428doi: 10.1007/s10126-019-09926-6
67稲垣 宗一Soichi InagakiHistone Acetylation Orchestrates Wound-Induced Transcriptional Activation and Cellular Reprogramming in ArabidopsisCommun Biol. 2019 Nov 4;2:404.31701032doi: 10.1038/s42003-019-0646-5
68粟津 暁紀Akinori AwazuHistone Tail Dynamics in Partially Disassembled Nucleosomes During Chromatin RemodelingFront Mol Biosci. 2019 Nov 28;6:133.31850366doi: 10.3389/fmolb.2019.00133
69秋光 信佳Nobuyoshi AkimitsuIdentification of 2H phosphoesterase superfamily proteins with 2'-CPDase activity. Biochimie.Biochimie. 2019 Oct;165:235-244.31422053doi: 10.1016/j.biochi.2019.08.008
70前野 慎太朗Shintaro MaenoIntroduction of bifunctional alcohol/acetaldehyde dehydrogenase gene (adhE) in Fructobacillus fructosus settled its fructophilic characteristicsRes Microbiol. Jan-Feb 2019;170(1):35-42.30291951doi: 10.1016/j.resmic.2018.09.004
71谷澤 靖洋, 中村 保一Yasuhiro Tanizawa,Yasukazu NakamuraLactobacillus salitolerans sp. nov., a novel lactic acid bacterium isolated from spent mushroom substrates.Int J Syst Evol Microbiol. 2019 Apr;69(4):964-969. 30628884doi: 10.1099/ijsem.0.003224
72谷澤 靖洋, 中村 保一Yasuhiro Tanizawa,Yasukazu NakamuraLarge-scale genome analysis of bovine commensal Escherichia coli reveals that bovine-adapted E. coli lineages are serving as evolutionary sources of the emergence of human intestinal pathogenic strains.Genome Res. 2019 Sep;29(9):1495-1505.31439690doi: 10.1101/gr.249268.119
73神澤 秀明HIDEAKI KANZAWALate Jomon male and female genome sequences from the Funadomari site in Hokkaido, JapanAnthropological ScienceVol. 127(2), 83-108, 2019NULLdoi: 10.1537/ase.190415
74福永 津嵩Tsukasa FukunagaLncRRIsearch: A Web Server for lncRNA-RNA Interaction Prediction Integrated With Tissue-Specific Expression and Subcellular Localization DataFront Genet. 2019 May 28;10:462.31191601doi: 10.3389/fgene.2019.00462
75藤井 雅史, 黒田 真也Masashi Fujii,Shinya KurodaLogical design of oral glucose ingestion pattern minimizing blood glucose in humansNPJ Syst Biol Appl. 2019 Sep 2;5:31. 31508240doi: 10.1038/s41540-019-0108-1
76岸田 拓士, 辰本 将司Takushi Kishida,Shoji TatsumotoLoss of olfaction in sea snakes provides new perspectives on the aquatic adaptation of amniotesProc Biol Sci. 2019 Sep 11;286(1910):20191828.31506057doi: 10.1098/rspb.2019.1828
77濱田 麻友子Mayuko HamadaMedusozoan genomes inform the evolution of the jellyfish body planNat Ecol Evol. 2019 May;3(5):811-822.30988488doi: 10.1038/s41559-019-0853-y
78近藤 伸二Shinji KondoMonoallelic, antisense and total RNA transcription in an in vitro neural differentiation system based on F1 hybrid miceJ Cell Sci. 2019 Sep 9;132(17):jcs228973.31409693doi: 10.1242/jcs.228973
79笠原 浩太Kota KasaharaMultidimensional Virtual-System Coupled Canonical Molecular Dynamics to Compute Free-Energy Landscapes of Peptide Multimer AssemblyJ Comput Chem. 2019 Oct 30;40(28):2453-2463. 31282023doi: 10.1002/jcc.26020
80安田 仁奈Nina YasudaMultiplexed ISSR genotyping by sequencing distinguishes two precious coral species (Anthozoa: Octocorallia: Coralliidae) that share a mitochondrial haplotypePeerJ. 2019 Oct 4;7:e7769.31598424doi: 10.7717/peerj.7769
81高木 宏樹Hiroki TakagiNext-generation sequencing-based bulked segregant analysis for QTL mapping in the heterozygous species Brassica rapaTheor Appl Genet. 2019 Oct;132(10):2913-2925. 31317235doi: 10.1007/s00122-019-03396-z
82藤井 雅史Masashi FujiiNMDAR-Mediated Ca2+ Increase Shows Robust Information Transfer in Dendritic Spines.Biophys J. 2019 May 7;116(9):1748-1758.31023534doi: 10.1016/j.bpj.2019.03.030
83新城 恵子Keiko ShinjoPathogenic Epigenetic Consequences of Genetic Alterations in IDH-Wild-Type Diffuse Astrocytic Gliomas.Cancer Res. 2019 Oct 1;79(19):4814-4827. 31431463doi: 10.1158/0008-5472.CAN-19-1272
84岩崎 渉Wataru IwasakiPossible cross-feeding pathway of facultative methylotroph Methyloceanibacter caenitepidi Gela4 on methanotroph Methylocaldum marinum S8PLoS One. 2019 Mar 14;14(3):e0213535.30870453doi: 10.1371/journal.pone.0213535
85稲垣 宗一Soichi InagakiPrimed histone demethylation regulates shoot regenerative competencyNat Commun. 2019 Apr 16;10(1):1786. 30992430doi: 10.1038/s41467-019-09386-5
86井戸川 雅史Masashi IdogawaPrognostic Effect of Long Noncoding RNA NEAT1 Expression Depends on p53 Mutation Status in Cancer.J Oncol. 2019 May 2;2019:4368068. 31186635doi: 10.1155/2019/4368068
87前野 慎太朗, 遠藤 明仁Shintaro Maeno,Akihito EndoPseudofructophilic Leuconostoc citreum strain F192-5, isolated from satsuma mandarin peelAppl Environ Microbiol. 2019 Oct 1;85(20):e01077-19.31399409doi: 10.1128/AEM.01077-19
88上坂 将弘Masahiro UesakaRecapitulation-like developmental transitions of chromatin accessibility in vertebratesZoological Lett. 2019 Nov 14;5:33.31807314doi: 10.1186/s40851-019-0148-9
89鈴木 啓道, 柴原 一陽Hiromichi Suzuki,Ichiyo ShibaharaRecurrent non-coding U1-snRNA mutations drive cryptic splicing in Shh medulloblastoma.Nature. 2019 Oct;574(7780):707-711.31664194doi: 10.1038/s41586-019-1650-0
90西原 秀典Hidenori NishiharaRetrotransposons spread potential cis-regulatory elements during mammary gland evolutionNucleic Acids Res. 2019 Dec 16;47(22):11551-11562.31642473doi: 10.1093/nar/gkz1003
91清水 元樹Motoki ShimizuRNA-Seq of in planta-expressed Magnaporthe oryzae genes identifies MoSVP as a highly expressed gene required for pathogenicity at the initial stage of infectionMol Plant Pathol. 2019 Dec;20(12):1682-1695.31560822doi: 10.1111/mpp.12869
92藤井 雅史, 黒田 真也Masashi Fujii,Shinya KurodaRobustness against additional noise in cellular information transmissionPhys Rev E. 2019 Oct;100(4-1):042403.31770940doi: 10.1103/PhysRevE.100.042403
93伊藤 佑Tasuku ItoSeasonal Stability and Dynamics of DNA Methylation in Plants in a Natural EnvironmentGenes (Basel). 2019 Jul 17;10(7):544. 31319612doi: 10.3390/genes10070544
94前田 安信Yasunobu MaedaSecretome analysis of Strongyloides venezuelensis parasitic stages reveals that soluble and insoluble proteins are involved in its parasitismParasit Vectors. 2019 Jan 9;12(1):21.30626426doi: 10.1186/s13071-018-3266-x
95川上 広宣Hironori KawakamiSpecific basic patch-dependent multimerization of Saccharomyces cerevisiae ORC on single-stranded DNA promotes ATP hydrolysisGenes Cells. 2019 Sep;24(9):608-618.31233675doi: 10.1111/gtc.12710
96田中 龍聖Ryusei TanakaStage-specific transcriptome of Bursaphelenchus xylophilus reveals temporal regulation of effector genes and roles of the dauer-like stages in the lifecycle.Sci Rep. 2019 Apr 15;9(1):6080.30988401doi: 10.1038/s41598-019-42570-7
97山口 雅也Masaya YamaguchiStreptococcus pneumoniae Evades Host Cell Phagocytosis and Limits Host Mortality Through Its Cell Wall Anchoring Protein PfbAFront Cell Infect Microbiol. 2019 Aug 20;9:301.31482074doi: 10.3389/fcimb.2019.00301
98矢野 大和Hirokazu YanoThe recombination-cold region as an epidemiological marker of recombinogenic opportunistic pathogen Mycobacterium aviumBMC Genomics. 2019 Oct 17;20(1):752. 31623552doi: 10.1186/s12864-019-6078-2
99花田 耕介Kousuke HanadaTyr82 Amino Acid Mutation in PB1 Polymerase Induces an Influenza Virus Mutator PhenotypeJ Virol. 2019 Oct 29;93(22):e00834-19. 31462570doi: 10.1128/JVI.00834-19
100橘 裕司Hiroshi TachibanaWhole genome sequencing of Entamoeba nuttalli reveals mammalian host-related molecular signatures and a novel octapeptide-repeat surface proteinPLoS Negl Trop Dis. 2019 Dec 5;13(12):e0007923.31805050doi: 10.1371/journal.pntd.0007923
101神澤 秀明HIDEAKI KANZAWA西北九州弥生人の遺伝的な特徴 ―佐世保市下本山岩陰遺跡出土人骨の核ゲノム解析―Anthropological Science (Japanese Series)Vol. 127(1), 25-43, 2019NULLdoi: 10.1537/asj.1904231
102小林 和也Kazuya KobayashiSexual selection sustains biodiversity via producing negative density-dependent population growthJournal of Ecology Volume107, Issue3 May 2019 Pages 1433-1438NULLdoi.org/10.1111/1365-2745.13088
103尾崎 遼Haruka OzakiPossible cross-feeding pathway of facultative methylotroph Methyloceanibacter caenitepidi Gela4 on methanotroph Methylocaldum marinum S8PLoS One. 2019 Mar 14;14(3):e0213535.30870453doi: 10.1371/journal.pone.0213535.
104平野 雅規MasakiHirano Aberrant active enhancers associated with downregulation of RET finger prote in overcomes chemoresistance in glioblastoma. (学会発表)Cell Reports Volume 26, Issue 9, 26 February 2019, Pages 2274-2281.e5NULLdoi.org/10.1016/j.celrep.2019.01.109

Additional papers submitted after the end-of-year renewal in 2019.

Supercomputer users in authors list (Japanese)Supercomputer users in authors listTitleJournal, Volume, Number, PagesPMIDDOI
1Yassouf Mhd YousufM Yousuf YassoufCompliance with Deferoxamine Therapy and Thyroid Dysfunction of Patients with β-Thalassemia Major in SyriaHemoglobin. 2019 May;43(3):218-221.31373517doi: 10.1080/03630269.2019.1639517