| Supercomputer users in authors list (Japanese) | Supercomputer users in authors list | Title | Journal, Volume, Number, Pages | PMID | DOI |
1 | 牧野 能士, 河田 雅圭 | Takashi Makino,Masakado Kawata | Invasive invertebrates associated with highly duplicated gene content | Mol Ecol. 2019 Apr;28(7):1652-1663. | 30811716 | doi: 10.1111/mec.15019 |
2 | 上田 真保子 | Mahoko Takahashi Ueda | Systematic survey of non-retroviral virus-like elements in eukaryotic genomes | Virus Res. 2019 Mar;262:30-36. | 29425804 | doi: 10.1016/j.virusres.2018.02.002 |
3 | 松波 雅俊 | M Matsunami | Caste-specific microRNA expression in termites: insights into soldier differentiation. | Insect Mol Biol. 2019 Feb;28(1):86-98. | 30126008 | doi: 10.1111/imb.12530 |
4 | 前野 慎太朗, 遠藤 明仁 | Shintaro Maeno,Akihito Endo | Introduction of bifunctional alcohol/acetaldehyde dehydrogenase gene (adhE) in Fructobacillus fructosus settled its fructophilic characteristics | Res Microbiol. Jan-Feb 2019;170(1):35-42. | 30291951 | doi: 10.1016/j.resmic.2018.09.004 |
5 | 黒田 真也 | Shinya Kuroda | Reconstruction of global regulatory network from signaling to cellular functions using phosphoproteomic data | Genes Cells. 2019 Jan;24(1):82-93. | 30417516 | doi: 10.1111/gtc.12655 |
6 | 加賀谷 祐輝 | Yuki Kagaya | COXPRESdb v7: a gene coexpression database for 11 animal species supported by 23 coexpression platforms for technical evaluation and evolutionary inference | Nucleic Acids Res. 2019 Jan 8;47(D1):D55-D62. | 30462320 | doi: 10.1093/nar/gky1155 |
7 | 谷澤 靖洋, 遠野 雅徳 | Yasuhiro Tanizawa,Masanori Tohno | Reclassification of Paenibacillus thermophilus Zhou et al. 2013 as a later heterotypic synonym of Paenibacillus macerans (Schardinger 1905) Ash et al. 1994 | Int J Syst Evol Microbiol. 2019 Feb;69(2):417-421. | 30540240 | doi: 10.1099/ijsem.0.003160 |
8 | 片山 俊明 | Toshiaki Katayama | TogoGenome/TogoStanza: modularized Semantic Web genome database | Database (Oxford). 2019 Jan 1;2019:bay132. | 30624651 | doi: 10.1093/database/bay132 |
9 | 前田 安信 | Yasunobu Maeda | Secretome analysis of Strongyloides venezuelensis parasitic stages reveals that soluble and insoluble proteins are involved in its parasitism | Parasit Vectors. 2019 Jan 9;12(1):21. | 30626426 | doi: 10.1186/s13071-018-3266-x |
10 | 遠野 雅徳, 谷澤 靖洋 | Masanori Tohno,Yasuhiro Tanizawa | Lactobacillus salitolerans sp. nov., a novel lactic acid bacterium isolated from spent mushroom substrates | Int J Syst Evol Microbiol. 2019 Apr;69(4):964-969. | 30628884 | doi: 10.1099/ijsem.0.003224 |
11 | 平田 潤 | Jun Hirata | Genetic and phenotypic landscape of the major histocompatibilty complex region in the Japanese population. | Nat Genet. 2019 Mar;51(3):470-480. | 30692682 | doi: 10.1038/s41588-018-0336-0 |
12 | 根本 理子 | Michiko Nemoto | Integrated transcriptomic and proteomic analyses of a molecular mechanism of radular teeth biomineralization in Cryptochiton stelleri. | Sci Rep. 2019 Jan 29;9(1):856. | 30696920 | doi: 10.1038/s41598-018-37839-2 |
13 | 吉田 健太郎 | Kentaro Yoshida | Origin of wheat B-genome chromosomes inferred from RNA sequencing analysis of leaf transcripts from division Sitopsis species of Aegilops | DNA Res. 2019 Apr 1;26(2):171-182. | 30715317 | doi: 10.1093/dnares/dsy047 |
14 | 坊農 秀雅 | Hidemasa Bono | Comparative analysis of seven types of superoxide dismutases for their ability to respond to oxidative stress in Bombyx mori. | Sci Rep. 2019 Feb 18;9(1):2170. | 30778096 | doi: 10.1038/s41598-018-38384-8 |
15 | 平野 雅規 | Masaki Hirano | Aberrant Active cis-Regulatory Elements Associated with Downregulation of RET Finger Protein Overcome Chemoresistance in Glioblastoma | Cell Rep. 2019 Feb 26;26(9):2274-2281.e5. | 30811978 | doi: 10.1016/j.celrep.2019.01.109 |
16 | 諸橋 賢吾 | Kengo Morohashi | Genome-wide analysis of MpBHLH12, a IIIf basic helix-loop-helix transcription factor of Marchantia polymorpha. | J Plant Res. 2019 Mar;132(2):197-209. | 30840209 | doi: 10.1007/s10265-019-01095-w |
17 | 尾崎 遼 | Haruka Ozaki | Possible cross-feeding pathway of facultative methylotroph Methyloceanibacter caenitepidi Gela4 on methanotroph Methylocaldum marinum S8 | PLoS One. 2019 Mar 14;14(3):e0213535. | 30870453 | doi: 10.1371/journal.pone.0213535 |
18 | 岩切 淳一 | Junichi Iwakiri | reactIDR: evaluation of the statistical reproducibility of high-throughput structural analyses towards a robust RNA structure prediction | BMC Bioinformatics. 2019 Mar 29;20(Suppl 3):130. | 30925857 | doi: 10.1186/s12859-019-2645-4 |
19 | 佐藤 行人 | Yukuto Sato | Environmental DNA metabarcoding to detect pathogenic Leptospira and associated organisms in leptospirosis-endemic areas of Japan. | Sci Rep. 2019 Apr 25;9(1):6575. | 31024059 | doi: 10.1038/s41598-019-42978-1 |
20 | 高松 壮 | Takeshi Takamatsu | Salt Tolerance Improvement in Rice through Efficient SNP Marker-Assisted Selection Coupled with Speed-Breeding | Int J Mol Sci. 2019 May 26;20(10):2585. | 31130712 | doi: 10.3390/ijms20102585 |
21 | 岩切 淳一 | Junichi Iwakiri | LncRRIsearch: a web server for lncRNA-RNA interaction prediction integrated with tissue-specific expression and subcellular localization data | Front Genet. 2019 May 28;10:462. | 31191601 | doi: 10.3389/fgene.2019.00462 |
22 | 佐藤 行人 | Yukuto Sato | Evidence for frequency‐dependent selection maintaining polymorphism in the Batesian mimic Papilio polytes in multiple islands in the Ryukyus, Japan | Ecol Evol. 2019 Apr 24;9(10):5991-6002. | 31161014 | doi: 10.1002/ece3.5182 |
23 | 大里 直樹 | Naoki Osato | Improvement of Detection Performance of Fusion Genes from RNA-Seq Data by Clustering Short Reads | J Bioinform Comput Biol. 2019 Jun;17(3):1940008. | 31288642 | doi: 10.1142/S0219720019400080 |
24 | 前田 太 郎 | Taro Maeda | A draft genome assembly of the solar-powered sea slug Elysia chlorotica. | Sci Data. 2019 Feb 19;6:190022. | 30778257 | doi: 10.1038/sdata.2019.22 |
25 | 久保 稔 | Minoru Kubo | Single-cell transcriptome analysis of Physcomitrella leaf cells during reprogramming using microcapillary manipulation | Nucleic Acids Res. 2019 May 21;47(9):4539-4553. | 30873540 | doi: 10.1093/nar/gkz181 |
26 | 佐藤 賢二 | Kenji Satou | Applying Deep Learning Models to Mouse Behavior Recognition | Journal of Biomedical Science and Engineering, Vol.12 No.2, February 2019, 183-196. | NULL | doi: 10.4236/jbise.2019.122012 |
27 | 松波 雅俊 | Masatoshi Matsunami | A comprehensive reference transcriptome resource for the Iberian ribbed newt Pleurodeles waltl, an emerging model for developmental and regeneration biology. | DNA Res. 2019 Jun 1;26(3):217-229. | 31006799 | doi: 10.1093/dnares/dsz003 |
28 | 瀬川 高弘 | Takahiro Segawa | Genomic analyses of Bifidobacterium moukalabense reveal adaptations to frugivore/folivore feeding behavior | Microorganisms. 2019 Apr 4;7(4):99. | 30987363 | doi: 10.3390/microorganisms7040099 |
29 | 清水 徳朗 | Tokurou Shimizu | Determining the parental combinations of the triploid acid citrus cultivars ‘Yellow Bell’ and ‘Tahiti lime’ using DNA marker analyses | Scientia HorticulturaeVolume 246, 27 February 2019, Pages 893-897 | NULL | doi: 10.1016/j.scienta.2018.11.071 |
30 | 清水 徳朗 | SHIMIZU Tokurou | Citrus Breeding 2.0: A Novel Approach Integrating Deciphered Parentage and Genomics-assisted Selection | JARQ 53 (2), 81-85 (2019) | NULL | doi: 10.6090/jarq.53.81 |
31 | 大田 達郎 | Tazro Ohta | Accumulating computational resource usage of genomic data analysis workflow to optimize cloud computing instance selection | Gigascience. 2019 Apr 1;8(4):giz052. | 31222199 | doi: 10.1093/gigascience/giz052 |
32 | 渡邊 美穂 | Miho Watanabe | Genomic Characteristics of Desulfonema ishimotonii Tokyo 01T Implying Horizontal Gene Transfer Among Phylogenetically Dispersed Filamentous Gliding Bacteria | Front Microbiol. 2019 Feb 19;10:227. | 30837965 | doi: 10.3389/fmicb.2019.00227 |
33 | 野々山 朋信 | Tomonobu Nonoyama | Phenotypic determinism and contingency in the evolution of hypothetical tree-like organisms | PLoS One. 2019 Oct 31;14(10):e0211671. | 31671104 | doi: 10.1371/journal.pone.0211671 |
34 | 松波 雅俊 | Masatoshi Matsunami | A comprehensive reference transcriptome resource for the Iberian ribbed newt Pleurodeles waltl, an emerging model for developmental and regeneration biology. | DNA Res. 2019 Jun 1;26(3):217-229. | 31006799 | doi: 10.1093/dnares/dsz003 |
35 | 牛島 幸一郎 | Koichiro Ushijima | A Sequence Resource of Autosomes and Additional Chromosomes in the Peach Pathotype of Alternaria alternata | Mol Plant Microbe Interact. 2019 Oct;32(10):1273-1276. | 31125281 | doi: 10.1094/MPMI-04-19-0093-A |
36 | 大田 達郎 | Tazro Ohta | Accumulating computational resource usage of genomic data analysis workflow to optimize cloud computing instance selection | Gigascience. 2019 Apr 1;8(4):giz052. | 31222199 | doi: 10.1093/gigascience/giz052 |
37 | 矢原 耕史 | Koji Yahara | Analysis of genetic recombination and the pan-genome of a highly recombinogenic bacteriophage species | Microb Genom. 2019 Aug;5(8):e000282. | 31310202 | doi: 10.1099/mgen.0.000282 |
38 | 渡部 裕介 | Yusuke Watanabe | Analysis of whole Y-chromosome sequences reveals the Japanese population history in the Jomon period | Sci Rep. 2019 Jun 17;9(1):8556. | 31209235 | doi: 10.1038/s41598-019-44473-z |
39 | 丹野 広貴, 遠藤 明仁 | Hiroki Tanno,Akihito Endo | Characterization of fructooligosaccharide-degrading enzymes in human commensal Bifidobacterium longum and Anaerostipes caccae | Biochem Biophys Res Commun. 2019 Oct 15;518(2):294-298. | 31420164 | doi: 10.1016/j.bbrc.2019.08.049 |
40 | 沖 真弥 | Shinya Oki | Cis-control of Six1 expression in neural crest cells during craniofacial development. | Dev Dyn. 2019 Dec;248(12):1264-1272. | 31464047 | doi: 10.1002/dvdy.109 |
41 | 中尾 亮 | Ryo Nakao | Complete Genome Sequence of Rickettsia asiatica Strain Maytaro1284, a Member of Spotted Fever Group Rickettsiae Isolated from an Ixodes ovatus Tick in Japan. | Microbiol Resour Announc. 2019 Sep 12;8(37):e00886-19. | 31515347 | doi: 10.1128/MRA.00886-19 |
42 | 渡邊 慧 | Kei Watanabe | Complete sequence of mitochondrial DNA of Gloiopeltis furcata (Postels & Ruprecht) J. Agardh | Mitochondrial DNA B Resour. 2019 Jul 18;4(2):2543-2544. | 33365618 | doi: 10.1080/23802359.2019.1639558 |
43 | 齋藤 裕 | Yutaka Saito | Comprehensive epigenome characterization reveals diverse transcriptional regulation across human vascular endothelial cells | Epigenetics Chromatin. 2019 Dec 19;12(1):77. | 31856914 | doi: 10.1186/s13072-019-0319-0 |
44 | 上田 真保子 | Mahoko Takahashi Ueda | Comprehensive genomic analysis reveals dynamic evolution of mammalian transposable elements that
code for viral-like protein domains | BioRxiv, November 12, 2019. | NULL | doi: 10.1186/s13100-020-00224-w |
45 | 花田 耕介 | Kousuke Hanada | Contribution of Functional Divergence through Copy Number Variations to the Inter-species and Intra-species Diversity in Specialized Metabolites | Front Plant Sci. 2019 Nov 26;10:1567. | 31850041 | doi: 10.3389/fpls.2019.01567 |
46 | 齋藤 裕 | Yutaka Saito | Developing a codon optimization method for improved expression of recombinant proteins in actinobacteria | Sci Rep. 2019 Jun 6;9(1):8338. | 31171855 | doi: 10.1038/s41598-019-44500-z |
47 | 門田 有希 | Yuki Monden | Development of molecular markers associated with resistance to Meloidogyne incognita by performing quantitative trait locus analysis and genome-wide association study in sweetpotato | DNA Res. 2019 Oct 1;26(5):399-409. | 31377774 | doi: 10.1093/dnares/dsz018 |
48 | 湯山 育子 | Ikuko Yuyama | Differential gene expression in skeletal organic matrix proteins of scleractinian corals associated with mixed aragonite/calcite skeletons under low mMg/Ca conditions | PeerJ. 2019 Jul 15;7:e7241. | 31341732 | doi: 10.7717/peerj.7241 |
49 | 瀬川 高弘 | Takahiro Segawa | Draft Genome Sequence of Clostridium tagluense strain A121T isolated from a permafrost core in the Canadian High Arctic | Microbiol Resour Announc. 2019 Jan 31;8(5):e01630-18. | 30714037 | doi: 10.1128/MRA.01630-18 |
50 | 平尾 章 | Akira S Hirao | Draft genome sequence of novel Metschnikowia sp. strain JCM 33374, a nectar yeast isolated from a bumblebee | Microbiol Resour Announc. 2019 Sep 12;8(37):e00704-19. | 31515343 | doi: 10.1128/MRA.00704-19 |
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